Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329D01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19152-7|CAA79539.2|  643|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AF025463-1|AAB71008.3|  871|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotei...    27   8.1  

>Z19152-7|CAA79539.2|  643|Caenorhabditis elegans Hypothetical
           protein B0464.6 protein.
          Length = 643

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 7   DDNEKNMQFFFPYLQTNSKWNCSLISNVSSVHFVFDAGFSS 129
           +DN++  Q     L+T  KW+  L++  S  H V ++ F+S
Sbjct: 45  NDNQRLEQSRITMLETRIKWHIILLTGFSIDHLVLNSSFTS 85


>AF025463-1|AAB71008.3|  871|Caenorhabditis elegans Hypothetical
           protein K10B4.3 protein.
          Length = 871

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +1

Query: 1   IQDDNEKNMQFFFPYLQTNSKWNCSLISNVSSV-HFVFDAGFSSTTAAQINRKQKKKRGC 177
           I++ +E      F    TN+ WNC   +N   V +FV + G       Q+  K+ + R  
Sbjct: 715 IKELDEAGFFACFTMDSTNNMWNCISCTNPEKVKYFVEEGGAEKVLEGQLKEKKGRWRFL 774

Query: 178 ER 183
           +R
Sbjct: 775 KR 776


>Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical protein
            F22E10.3 protein.
          Length = 1327

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 111  RCRIQFDHSSTNQQETKKKTRMRAKIE-VNWKLCLHYL 221
            RC + FDH  T+ ++ K+    +  IE +N+ L   ++
Sbjct: 965  RCELFFDHYQTSSKQQKRSELKKGMIEAINYSLTQSFM 1002


>AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotein
            related (146.8 kD)(pgp-14) protein.
          Length = 1327

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 111  RCRIQFDHSSTNQQETKKKTRMRAKIE-VNWKLCLHYL 221
            RC + FDH  T+ ++ K+    +  IE +N+ L   ++
Sbjct: 965  RCELFFDHYQTSSKQQKRSELKKGMIEAINYSLTQSFM 1002


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,267,758
Number of Sequences: 27780
Number of extensions: 221256
Number of successful extensions: 582
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)