Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329C11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    29   0.32 
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    27   2.2  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    27   2.2  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   3.0  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   3.0  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    25   6.8  

>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -1

Query: 176 ILIL*YTKTKNYMFFSKIFPLFINTK--HFSYIYRVIANHFI 57
           IL++ +   KN+ FF K + LF+ +K     + YRV+   F+
Sbjct: 228 ILLVAFASQKNFWFFEKTYDLFMQSKLTWRPFTYRVLIESFM 269


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 338 PILNILMFNYLYKNLQSTIPF 276
           P++N+  FNY+++NL   I F
Sbjct: 183 PVINVSFFNYIFQNLGWLIRF 203


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = -1

Query: 398 WPESPCLLKCYNHENSDILIPILNILMFNYLYKNLQSTIPFLKLIKDHAKNSNIDKNITL 219
           W   P   K  N     + IP+LN  +   +  N+QST  +L    +      +D+  +L
Sbjct: 614 WTIKPTYEKSSNFSCLQLPIPVLNTPILTPVTINIQSTTYYLIGYANQNSKKTLDQPTSL 673

Query: 218 IAL 210
           + L
Sbjct: 674 LVL 676


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 377 LKCYNHENSDILIPILNILM 318
           L+  NHEN+DI I +L +L+
Sbjct: 151 LELMNHENADITITVLELLI 170


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -2

Query: 439 HRHHSKDREDSCAHGRNRHVC*NVTITKIP 350
           H HH K +  S  H  N     ++T T  P
Sbjct: 557 HHHHKKSKSSSSKHKENDKASVSITTTTTP 586


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
            complex subunit Taf111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 376  SRHGDSGHVRTNLLCPCCG 432
            S  G  GH++TN +CP  G
Sbjct: 948  SNCGQVGHMKTNKICPLFG 966


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,895,668
Number of Sequences: 5004
Number of extensions: 36492
Number of successful extensions: 91
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)