Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329C11f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785...    29   3.0  
12_02_0423 + 18944555-18945226,18945309-18945545                       28   4.0  
12_02_0798 + 23270223-23270693,23270760-23271069,23271103-23272730     28   5.2  
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485...    27   6.9  
04_01_0112 + 1151242-1151272,1151722-1151928,1151996-1152318,115...    27   6.9  
03_03_0012 + 13737898-13740031,13740347-13740486                       27   6.9  
01_06_1191 - 35297005-35297473,35297812-35298965                       27   6.9  

>06_03_0924 - 25976629-25976979,25977471-25978424,25978512-25978565,
            25979135-25979254,25979357-25979532,25979624-25980107,
            25980541-25980744,25981671-25981877,25982179-25982271,
            25982433-25982621,25983364-25983423,25983591-25983927,
            25984195-25984432,25984614-25984816,25985549-25986554,
            25987125-25987290,25987715-25987824,25987944-25988195,
            25988360-25988402,25988488-25988550,25989512-25989624,
            25990787-25990838
          Length = 1824

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 385  GDSGHVRTNLLCPCCGGDGE 444
            G  GH+RTN LCP  G D E
Sbjct: 1389 GQLGHMRTNKLCPKYGEDPE 1408


>12_02_0423 + 18944555-18945226,18945309-18945545
          Length = 302

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 457 HSEGVHHRHHSKDREDSCAHGRNRHV 380
           H +G HH HH++  + + A  R R +
Sbjct: 150 HDDGRHHHHHNQAVQSAAARERRRRI 175


>12_02_0798 + 23270223-23270693,23270760-23271069,23271103-23272730
          Length = 802

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 125 IFPLFINTKHFSYIY 81
           +FPL +NT+HFSY +
Sbjct: 134 VFPLDVNTRHFSYTH 148


>05_03_0235 -
           10747649-10748118,10748226-10748314,10748477-10748574,
           10748934-10749046,10749107-10749200,10749557-10749589,
           10749734-10749851,10750110-10750210,10751036-10751233,
           10751337-10751471,10751752-10751830,10753650-10753738,
           10753835-10753987,10754100-10754285
          Length = 651

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -2

Query: 457 HSEGVHHRHHSKDR-EDSCAHGRNRH 383
           H +G HHRHH   R     +HG + H
Sbjct: 530 HQKGRHHRHHHDHRHRHGHSHGDHHH 555


>04_01_0112 +
           1151242-1151272,1151722-1151928,1151996-1152318,
           1152552-1153793
          Length = 600

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = -1

Query: 368 YNHENSDILIPILNILM---FNYLYKNLQSTIPF 276
           YNH N  + + + N+     FN  Y NL   IPF
Sbjct: 474 YNHLNGSLPMQLANLSFLCSFNVAYNNLSGEIPF 507


>03_03_0012 + 13737898-13740031,13740347-13740486
          Length = 757

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +1

Query: 106 FINKGNIFEKNM*FLVLVYYNINIVLKSS*KGQIYKAISVIFLSMF 243
           F+ KG +   N+  L L  Y+I ++  SS K ++Y   +V  L++F
Sbjct: 53  FVQKG-VLATNVLSLSLSTYSIGLMQSSSVKSEVYPIWAVSMLTLF 97


>01_06_1191 - 35297005-35297473,35297812-35298965
          Length = 540

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -1

Query: 290 STIPFLKLIKDHAKNSNIDKNI--TLIAL*I*PF*ELFNTILIL*YTKTKNYMFFSKIFP 117
           +T+ +L  I + A NS +  ++  + + L    +  L  T   L  +KTK Y+  + + P
Sbjct: 119 NTVSYLLCINNFASNSRVAVSLATSYLGLSAKVYTSLAETFPGLANSKTKTYLLLNAVVP 178

Query: 116 LFI 108
           LF+
Sbjct: 179 LFV 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,261,161
Number of Sequences: 37544
Number of extensions: 193068
Number of successful extensions: 481
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)