Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329C11f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z81476-10|CAN86579.1|  224|Caenorhabditis elegans Hypothetical p...    29   2.0  
AF125442-2|AAD12792.1|  360|Caenorhabditis elegans Serpentine re...    29   2.7  
U49954-2|AAY86289.1|  192|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U41538-3|AAP31431.1|  142|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z81105-1|CAB03215.2|  142|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U53154-5|AAC25853.1|  347|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AC084158-15|AAK68556.1|  190|Caenorhabditis elegans Hypothetical...    27   8.1  

>U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical
           protein C33G8.12 protein.
          Length = 358

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 412 LLCPCCGGDGELPHYG 459
           +LC  CG DG  PHYG
Sbjct: 12  MLCLVCGADGSEPHYG 27


>Z81476-10|CAN86579.1|  224|Caenorhabditis elegans Hypothetical
           protein C25F9.13 protein.
          Length = 224

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/60 (31%), Positives = 33/60 (55%)
 Frame = +1

Query: 178 VLKSS*KGQIYKAISVIFLSMFEFLAWSFINFKNGIVDCKFLYK*LNINILSIGIKISEF 357
           ++K++    I+ A   IF+S F      F+N  + I+ C    +  ++N+L IGI IS+F
Sbjct: 8   IIKTAEVCAIFAAKLQIFISYFGV----FLNILHFIILCNKKLRYQSVNVLLIGIAISDF 63


>AF125442-2|AAD12792.1|  360|Caenorhabditis elegans Serpentine
           receptor, class v protein19 protein.
          Length = 360

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +1

Query: 97  CLVFINKGNIFEKNM*FLVLVYYNINIVLKSS*KGQIYKAISVIFLSMFEFLAWSFINFK 276
           C++F +   I  ++   +V V  N NI+ KS+    ++  IS +   +F  L W FI  +
Sbjct: 203 CIIFYSSTEIKYESPERMVYVM-NPNIIKKSTKTAFVFVIISCLICLIFYSLIWKFIKTR 261

Query: 277 NGIV 288
           +  V
Sbjct: 262 SQTV 265


>U49954-2|AAY86289.1|  192|Caenorhabditis elegans Hypothetical
           protein Y102E9.5 protein.
          Length = 192

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 457 HSEGVHHRHHSKDREDSCAHGRNRHVC 377
           HS  V HR+  K R     +GR+R  C
Sbjct: 132 HSNNVRHRYSDKTRHFQLINGRSRFCC 158


>U41538-3|AAP31431.1|  142|Caenorhabditis elegans Hypothetical
           protein R04E5.8b protein.
          Length = 142

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 457 HSEGVHHRHHSKDREDSCAHGRNRH 383
           H      RHH++DR     H RNRH
Sbjct: 97  HQNQDRSRHHNQDRNRRQNHDRNRH 121


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical protein
            R04E5.8a protein.
          Length = 997

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 457  HSEGVHHRHHSKDREDSCAHGRNRH 383
            H      RHH++DR     H RNRH
Sbjct: 941  HQNQDRSRHHNQDRNRRQNHDRNRH 965


>Z81105-1|CAB03215.2|  142|Caenorhabditis elegans Hypothetical
           protein R05D7.1 protein.
          Length = 142

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +1

Query: 214 AISVIFLSMFEFLAWSFINFKNGIVDCKFLYK*LNINILSIG 339
           A+++    +  FL+W+F+   NG+V   F    +    L++G
Sbjct: 85  AVAIFSPLLLGFLSWTFVELNNGLVHSLFHLSVITQVALAVG 126


>U53154-5|AAC25853.1|  347|Caenorhabditis elegans Hypothetical
           protein C33G8.10 protein.
          Length = 347

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 412 LLCPCCGGDGELPHYGPRSNR 474
           +LC  CG +G  PH+G  S R
Sbjct: 1   MLCQVCGAEGPEPHFGGISCR 21


>AC084158-15|AAK68556.1|  190|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.12 protein.
          Length = 190

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -3

Query: 507 SRADEAAAINSSVASRSIVREFTIATTARTEKIRAHMAGIAMSAKM-LQSRKFR 349
           S   E     S+    + +RE  + T A  +KIRAHM   A+  K   ++ KF+
Sbjct: 67  SEKSEKGGATSAPPKNTEMREKLLETQANLQKIRAHMKKNALRHKSDTRTSKFK 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,277,656
Number of Sequences: 27780
Number of extensions: 195136
Number of successful extensions: 618
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)