Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329C10f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0168 - 21466431-21466445,21467053-21467160,21467222-214673... 101 4e-22
02_05_0003 - 24867053-24867145,24867264-24867437,24867673-248677... 46 2e-05
11_06_0690 + 26303733-26306540 29 3.0
03_05_0167 - 21448714-21448846,21449748-21449870,21450024-214503... 28 5.2
07_03_1497 - 26990647-26991531,26991609-26991967,26992302-26992371 27 9.1
04_01_0399 - 5214183-5214206,5215437-5215502,5219537-5219635,521... 27 9.1
>03_05_0168 -
21466431-21466445,21467053-21467160,21467222-21467365,
21467778-21467846,21467928-21468071,21468409-21468565,
21468671-21468767,21469015-21469297,21469382-21469507,
21470098-21470178,21471990-21472072,21472393-21472478,
21473329-21473422,21473516-21473681,21473777-21473851,
21474082-21474157,21474259-21474347
Length = 630
Score = 101 bits (242), Expect = 4e-22
Identities = 53/123 (43%), Positives = 82/123 (66%), Gaps = 2/123 (1%)
Frame = +1
Query: 157 KKPSKQEEEISPNEYYKLRSGAVAALK-NGLKEDHPYPHKFNVSISLEEFIEKYQNLNNG 333
K+ + +EE+ P +YY+ R A+ +LK G+ +PYPHKF +I++ ++IEKY+++N G
Sbjct: 68 KESAADDEEMDPTQYYENRLKALDSLKATGV---NPYPHKFLANITVADYIEKYKSMNVG 124
Query: 334 DVLENVTLSVAGRVHSIRESGAKLIFYDLRAEGAKIQVMANAKLYETED-KFFKDTDKLR 510
D L +VT +AGR+ + R +KL+FYDL G K+QV A+A+ E ED +F K L+
Sbjct: 125 DKLVDVTECLAGRIMTKRAQSSKLLFYDLYGGGEKVQVFADARTSELEDNEFIKFHSTLK 184
Query: 511 RGD 519
RGD
Sbjct: 185 RGD 187
>02_05_0003 -
24867053-24867145,24867264-24867437,24867673-24867735,
24868108-24868198,24869579-24869673,24870471-24870668,
24871475-24871648,24872335-24872439,24872645-24872737,
24873688-24873690,24874776-24874844,24875208-24875265,
24875810-24875918,24876603-24876714,24877992-24878204,
24878214-24878546
Length = 660
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/76 (34%), Positives = 46/76 (60%)
Frame = +1
Query: 259 PYPHKFNVSISLEEFIEKYQNLNNGDVLENVTLSVAGRVHSIRESGAKLIFYDLRAEGAK 438
PY +K++ + + +E + Y +L NG+V +V +S+AGR+ + R G KL+F +R +
Sbjct: 122 PYAYKWDRTHTTKELQDGYTHLENGEVCADVAVSIAGRIVARRAFG-KLVFMTVRDDSGT 180
Query: 439 IQVMANAKLYETEDKF 486
IQ+ K TE++F
Sbjct: 181 IQLYCE-KDSLTEEQF 195
>11_06_0690 + 26303733-26306540
Length = 935
Score = 28.7 bits (61), Expect = 3.0
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = +1
Query: 169 KQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSISLEEFIEKYQNLNNGDVLEN 348
+Q +++ P Y RS +AA KNG K H V + FIE + GDVL
Sbjct: 847 RQRQQVVP--YSPRRSNRLAA-KNGGKHIHSSTKAQRVVMKKLGFIEDENKADEGDVLRY 903
Query: 349 VTL 357
V L
Sbjct: 904 VEL 906
>03_05_0167 -
21448714-21448846,21449748-21449870,21450024-21450302,
21450389-21450672,21450737-21450964,21452937-21453110,
21453198-21453732,21453779-21453840,21453908-21454231,
21454664-21455093,21457033-21457268,21457355-21457414,
21457495-21457628,21457884-21458010,21458239-21458337,
21458414-21458513,21458601-21458671,21459101-21459172,
21459656-21459787,21460512-21460670
Length = 1253
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 175 EEEISPNEYYKLRSGAVAALKNGLKEDH 258
EE+++P + R G+V K LK DH
Sbjct: 5 EEQVAPEQVISTRGGSVLGKKTILKSDH 32
>07_03_1497 - 26990647-26991531,26991609-26991967,26992302-26992371
Length = 437
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 157 KKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSISL 294
K+P++ E ++ E YK + + NG+ D PHKF+ SL
Sbjct: 384 KEPNQMEMFLALPEIYK--RDYIVQMLNGMLRDPQIPHKFHDCSSL 427
>04_01_0399 -
5214183-5214206,5215437-5215502,5219537-5219635,
5219746-5219817,5219918-5220491,5220575-5220687,
5220842-5220941,5221059-5221181,5221268-5221335,
5221461-5221610,5221715-5221858,5222097-5222288,
5222710-5222794,5222892-5223043,5223138-5223296,
5223552-5223605,5223698-5223836,5223955-5224088,
5224200-5225117
Length = 1121
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 236 KMDSKKIIHILINSMLAFPWRNS*KSIRT*TTEMFWK-TSLCQWLVEFTPLENQERN*YS 412
K D I H + + ++ KS RT ++ TS C+W + TPL+N + +S
Sbjct: 658 KNDGSSIFHRIDWYRVVLDEAHTIKSPRTKAARAAYELTSHCRWCLTGTPLQNNLEDLFS 717
Query: 413 MI 418
++
Sbjct: 718 LL 719
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.310 0.128 0.340
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,353,658
Number of Sequences: 37544
Number of extensions: 170920
Number of successful extensions: 294
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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