Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329C08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase |Schizosacchar...    32   0.045
SPAC14C4.08 |mug5||meiotically upregulated gene Mug5|Schizosacch...    27   2.2  
SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|...    27   2.2  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    26   3.9  
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ...    25   5.2  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    25   5.2  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.0  
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    25   9.0  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   9.0  

>SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 32.3 bits (70), Expect = 0.045
 Identities = 21/91 (23%), Positives = 38/91 (41%)
 Frame = -1

Query: 275 LVIFARPNVSEIIKISRPTVCSIVPCNHTSMGVGLFMRSLIKYFLGHIDILIGLYCRANG 96
           +V   R    + + +   T+ S V CN    G  +   S  KY  GH D++ G+    + 
Sbjct: 161 IVKITRSKAKDALLVMDNTMLSPVLCNPLDFGYDIVYESATKYLSGHHDLMGGVIATKSD 220

Query: 95  R*AAY*VSFNCFIKLRKIGSRWAYFINFIFL 3
                 ++ + F  +  +G+  A F  F+ L
Sbjct: 221 E-----IAKSVFFNINAMGAAMAPFECFLLL 246


>SPAC14C4.08 |mug5||meiotically upregulated gene
           Mug5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +1

Query: 43  IFLNLIKQLKLTQYAAYLPFALQYKPINMSICPRKYFIKDLINK 174
           ++   +K++  T  + YL   L++    +++C R Y I+ L+NK
Sbjct: 127 LYQRQLKKISTTIESYYLADTLRHNQNILNLCERIYNIQKLLNK 170


>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 149 YFLGHIDILIGLYCRANGR*AAY*VSFNCFIKLRKIG 39
           YFLG +  +IG  C A+G      +S  C IK R++G
Sbjct: 326 YFLGILYFVIGGLCAASG----VILSIACLIKPRRVG 358


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 354  DSCPNYTAVCSFFYGIFINNPVSRFTFGDFCSSKRI 247
            +S   YT +C+      I   +  F F  FC  KRI
Sbjct: 1545 ESIKTYTLLCAHDSQKRIGGSIQEFEFISFCQQKRI 1580


>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 17/67 (25%), Positives = 30/67 (44%)
 Frame = +1

Query: 154 IKDLINKPTPIDVWLQGTIEQTVGRDILIISDTFGRAKITKCETADGVIDKNSIKKGTYC 333
           + D ++  TP++ W   TIE+ V R + I   T           AD  I K + K+    
Sbjct: 191 VLDSLHLDTPLEKWDDDTIEKVVNRFVDIKFPTVIALNKIDHPDADANISKIARKEDPNR 250

Query: 334 CIIGTAV 354
            ++ +A+
Sbjct: 251 LVLASAI 257


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 376 VQAYKFIDLSSQPEMKSSWEIEVNEANLFLEGKLIPN 486
           V+  K + +S+  E+KS   I  N + LFL G+ I N
Sbjct: 455 VRLRKCLKVSNTTELKSMKLINNNPSRLFLHGERIHN 491


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 360 CFDSCPNYTAVCSFFYGIFINNPVS 286
           C D C N +++ ++ +G F +N +S
Sbjct: 196 CSDLCLNSSSLANYLHGCFYHNTLS 220


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +1

Query: 244 SDTFGRAKITKCETADGVIDKNSIKKGTYCCIIG-TAVKTKGVPEVQAYKF 393
           S  F   +  KC+ A  + D   +KK  YC  +  T  +  G P +  Y F
Sbjct: 359 SGVFFEMQSVKCKVAQEIQDHGWLKKLIYCEEMDRTTPRNPGSPCISHYLF 409


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
 Frame = +1

Query: 199  QGTIEQTVGRDILIIS------DTFGRAKITKCET 285
            Q  +E T+ RD+++        D F RA + KCET
Sbjct: 1135 QQKVEDTIPRDVVLEKKMALQRDAFIRALVVKCET 1169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,126,286
Number of Sequences: 5004
Number of extensions: 44946
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)