Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329C08f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0715 + 27083102-27083308,27083384-27083504,27084014-270840... 40 0.001
03_03_0266 - 16014740-16015045,16015566-16015601,16015623-160156... 30 0.98
08_01_0203 + 1639993-1641141 29 2.3
02_01_0586 - 4334896-4335177,4336340-4338007 28 4.0
01_01_0717 - 5559414-5559435,5559589-5559764,5559876-5559917,556... 28 5.2
10_08_0377 + 17343244-17343372,17344316-17344393,17344496-173445... 27 9.1
07_01_0882 + 7342606-7342842,7343601-7344245,7344515-7344907 27 9.1
04_03_0658 + 18447986-18448117,18448204-18448317,18448388-184485... 27 9.1
>03_05_0715 +
27083102-27083308,27083384-27083504,27084014-27084087,
27085713-27085838
Length = 175
Score = 40.3 bits (90), Expect = 0.001
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 10/101 (9%)
Frame = +1
Query: 190 VWLQGTIEQTVGRD---ILIISDTFGRAKITKC-ETADGVIDKNSIKKGTYCCIIGTAVK 357
VWLQG + RD +++ D A+IT + A+G ++G Y ++G+
Sbjct: 66 VWLQGVVVLADYRDGAGHILVDDGSCVAEITLTPKEAEG----QPWREGMYVMVLGSYSG 121
Query: 358 TKGVPE-----VQAYKFIDLSSQPEMKSSWEIEVNEA-NLF 462
+ +P ++ +K +DLS+QP+ +S W +EV EA N F
Sbjct: 122 KESLPRANRPVIKVHKLVDLSAQPDRESMWYMEVVEAFNFF 162
>03_03_0266 - 16014740-16015045,16015566-16015601,16015623-16015643,
16016331-16016591,16017504-16018985,16019834-16019989,
16020154-16020277,16020399-16020615,16020877-16021774,
16022947-16023291,16023371-16023565,16023751-16024453,
16024866-16025467
Length = 1781
Score = 30.3 bits (65), Expect = 0.98
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 94 LPFALQYKPINMSICPRKYFIKDLINKPTPIDVWLQGTIEQTVGRDIL 237
+PF Y+ +N C F D +N+ TP+ V T+E+ VG L
Sbjct: 1315 MPFLQLYRALNKQWCRSNRF--DALNEYTPVHVSFLRTVERQVGPKFL 1360
>08_01_0203 + 1639993-1641141
Length = 382
Score = 29.1 bits (62), Expect = 2.3
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +1
Query: 301 DKNSIKKGTYCCI--IGTAVKTKGVPEVQAYKFIDLSSQPEMKSSWEIEVNEANLFLEGK 474
D++ +K CI + T+ K +GV E Q Y+ + LS M WEI + +
Sbjct: 315 DQHHCQKLKEACIEFLATSKKMEGVMESQGYEKMKLSCPSFMVDLWEIIGRKMTSY---S 371
Query: 475 LIPNI 489
+IPNI
Sbjct: 372 VIPNI 376
>02_01_0586 - 4334896-4335177,4336340-4338007
Length = 649
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +1
Query: 238 IISDTFGRAKITKCETADGVIDKNSIKKGTYCCIIGTAVKTKGVPEVQAYKF 393
IISD A + D D ++ G +C ++G+ ++ + PE+Q F
Sbjct: 111 IISDRLAAASFVRAGDDD---DDDAPSSGPWCLVVGSKIRARVGPELQLKTF 159
>01_01_0717 -
5559414-5559435,5559589-5559764,5559876-5559917,
5560039-5560080,5560268-5560370,5560466-5560527,
5561638-5561719,5567067-5567353,5568085-5568184,
5568584-5568651,5569819-5569860,5570001-5570032,
5572616-5572652
Length = 364
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +1
Query: 361 KGVPEVQAYKFIDLSSQPEMKSSWEIEVNEANLFLEGKLIPN 486
KG+ +++A K L ++ E E+E+ N++L K++ N
Sbjct: 262 KGIAKIRARKNELLYAEVEYMQKREVELQNDNMYLRSKVVEN 303
>10_08_0377 +
17343244-17343372,17344316-17344393,17344496-17344558,
17344836-17344883,17345203-17345349,17346264-17346395,
17346905-17346945,17347605-17347633,17348969-17349096,
17349919-17349994,17350111-17350231,17350300-17350399,
17350491-17350572,17350664-17350746,17351978-17352088,
17352260-17352311,17352363-17352408,17352652-17352860,
17353128-17353251,17353667-17353741,17353837-17353891,
17354476-17354595,17354670-17354762,17354869-17355014,
17355152-17355329,17356876-17357110,17357824-17357912
Length = 929
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 335 QQYVPFFMEFLSITPSAVSHLVIFARP 255
Q ++P F+E L++ P S I ARP
Sbjct: 140 QDFIPSFLELLTVLPQECSSHKIAARP 166
>07_01_0882 + 7342606-7342842,7343601-7344245,7344515-7344907
Length = 424
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -1
Query: 359 VLTAVPIIQQYVPFFMEFLSITPSAVSHLVIFARPNV 249
++T + ++ ++P F F+S S V L+ F P +
Sbjct: 348 MVTILSVVASFIPAFGSFISFVGSTVCALLSFVLPTI 384
>04_03_0658 +
18447986-18448117,18448204-18448317,18448388-18448507,
18448589-18449215,18449289-18449462,18449545-18449809,
18449889-18449959,18450043-18450145,18450221-18450280,
18450533-18450744,18450830-18450901,18451446-18451502,
18451598-18451882,18452359-18452371,18452396-18452463,
18452649-18452747,18452836-18452967,18453038-18453141,
18453234-18453423,18453519-18453524
Length = 967
Score = 27.1 bits (57), Expect = 9.1
Identities = 24/75 (32%), Positives = 35/75 (46%)
Frame = +1
Query: 118 PINMSICPRKYFIKDLINKPTPIDVWLQGTIEQTVGRDILIISDTFGRAKITKCETADGV 297
P + S P K IK LI+ L T+E + D + SD + + +TA
Sbjct: 611 PDSFSPTPAKQAIKKLISTKN-----LSQTLEDNI-EDCVNCSDNEDKENV---DTAQQF 661
Query: 298 IDKNSIKKGTYCCII 342
I +NSIKK + C+I
Sbjct: 662 IKQNSIKKESPDCVI 676
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,262,887
Number of Sequences: 37544
Number of extensions: 238344
Number of successful extensions: 561
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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