Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329C07f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human nie...    27   6.2  

>L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human niemann
            pick c disease)related protein 2 protein.
          Length = 1274

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 231  YLSTDNDIDIESVSTTVY-YST*FIGYYRYLDYSITSYPANVM 106
            YL+ D + ++E     VY YST F  Y +YL  S T Y   V+
Sbjct: 1046 YLADDIERELEIPGVKVYVYSTFFPYYEQYLTLSTTVYTLVVL 1088


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,960,643
Number of Sequences: 27780
Number of extensions: 175102
Number of successful extensions: 356
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)