Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329C06f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 28 0.97
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 27 1.7
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 27 1.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 3.0
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces... 26 3.0
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c... 26 3.9
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 26 3.9
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 26 3.9
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 5.2
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 25 5.2
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 25 6.8
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 25 6.8
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip... 25 6.8
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 25 6.8
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 9.0
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 25 9.0
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 27.9 bits (59), Expect = 0.97
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = +3
Query: 48 SHSEIPK--KYSENSLVPHLSG-IYLLKSMVTDTIRG 149
+H IP KY+ENSL+P + G Y + +++ T +G
Sbjct: 1119 NHDTIPLIVKYAENSLIPTVRGTAYFVLGLISRTSKG 1155
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 45 HSHSEIPKKYSENSLVPHLSGIYLLKSMVTDTIRGTVDEV 164
H ++IP+ YS L H S +Y + TD + GT+ ++
Sbjct: 498 HICTQIPEDYSPKFLSQHESFVYKQQPPSTDDLYGTMKKL 537
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 53 FRDPEEVFREFFGASSFGDLFAEIN 127
F D E F+ FG SF D E+N
Sbjct: 85 FEDAFEFFKNLFGGDSFRDYVGELN 109
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +1
Query: 301 RQRQHEEHHHNNAYCQRKKDHNQESHRERTRDNNVLRKRGSKVKDCQWSTS 453
R +HE H ++ + + + ESHRE + + K +D + S S
Sbjct: 589 RASKHESKHKRDSKHEARPESKHESHRESKSAEKDKKDKKDKKEDSKRSRS 639
>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 403
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 29 GYASFPFTFRDPEEVFREFFGASSF 103
G++++P PE++F FFG F
Sbjct: 200 GFSAYPQANMSPEDLFNSFFGDQFF 224
>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 208 VRDAGAGRHIRSHEREHVHVFLDLQQFA 291
+ D G H HE E VH+ L + FA
Sbjct: 191 IEDWGNLHHAGDHEEETVHIHLTISLFA 218
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +1
Query: 262 HVFLDLQQFAGGPRQRQHEEHHHNNAYCQRKKDH 363
H L+ F Q EE H ++ Q K+DH
Sbjct: 324 HPSLNRSPFTLATNSMQEEEEHLKASFAQNKRDH 357
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 6 PQTRTTNLAMQASHSHSEIPKKYSENSLVPHLSGIY 113
PQ T+L + H I K+S +VP GIY
Sbjct: 825 PQITKTSLNREKPALHGSINLKHSTRPVVPIADGIY 860
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 184 VVHVQSVRVRDAGAGRHIRSHEREHVHVFLDLQQFA 291
V H + V H++ HERE L+LQQ +
Sbjct: 2530 VSHTGKLLVEKVKGNYHLKEHEREVSSELLNLQQLS 2565
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/41 (21%), Positives = 18/41 (43%)
Frame = +1
Query: 313 HEEHHHNNAYCQRKKDHNQESHRERTRDNNVLRKRGSKVKD 435
HE HHH++ + H+ + + N + K++D
Sbjct: 296 HEGHHHHHHHHHHHHSHDDDPSSPAEKKQNHVPSPSEKIQD 336
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 126 MVTDTIRGTVDEVTRAPP 179
+VTD+I +DE+T+A P
Sbjct: 649 LVTDSISKCIDEITKASP 666
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +3
Query: 78 ENSLVPHLSGIYLLKSMVTDTIRGTVDEV 164
E PH G YL +++ ++ +G +DE+
Sbjct: 192 EKKFTPHSKGSYLKENLKSELRKGRLDEL 220
>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
antiporter Sod22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/68 (23%), Positives = 29/68 (42%)
Frame = +1
Query: 226 GRHIRSHEREHVHVFLDLQQFAGGPRQRQHEEHHHNNAYCQRKKDHNQESHRERTRDNNV 405
GR RS R F RQR+ H ++ + +++++ R+N+V
Sbjct: 605 GRKFRSFLRRSYDTFQRNLHEPDDERQREPTLGHIESSIENHRPRYSRQNSESHLRENSV 664
Query: 406 LRKRGSKV 429
R+R +V
Sbjct: 665 ERRRREQV 672
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/27 (29%), Positives = 11/27 (40%)
Frame = +1
Query: 322 HHHNNAYCQRKKDHNQESHRERTRDNN 402
HHH + Y DH+ H +N
Sbjct: 16 HHHTHDYDHHNHDHHGHDHHSHDSSSN 42
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/46 (21%), Positives = 22/46 (47%)
Frame = +1
Query: 127 WSRTPSEAQSTKSPEHLPHVVHVQSVRVRDAGAGRHIRSHEREHVH 264
WS TPS++ + + +P ++ S+ + A ++ S + H
Sbjct: 301 WSPTPSKSSTNLRQDGVPPILRFNSLSINTNVARNYLSSEKGYSAH 346
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/42 (19%), Positives = 23/42 (54%)
Frame = +1
Query: 307 RQHEEHHHNNAYCQRKKDHNQESHRERTRDNNVLRKRGSKVK 432
R+++ + HN + D ++++ ++ + N ++RG +K
Sbjct: 774 RENKRYKHNKLQTPKPADKFRDNYHKQNKRNREAKERGIGIK 815
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,984,148
Number of Sequences: 5004
Number of extensions: 35734
Number of successful extensions: 136
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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