Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329C05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|...    27   2.2  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    27   2.2  
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    27   2.2  
SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom...    27   2.2  
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    26   3.0  
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    25   6.8  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    25   9.0  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    25   9.0  

>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 330

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 22/99 (22%), Positives = 39/99 (39%)
 Frame = -3

Query: 504 LLKTNTNFRNKTIITTCFLINDMFSNSHYGSTHTQTHTVFAITRARLQNSGDVTSSFAHI 325
           LL+ ++N  + T++    +    + N +        H V A+  A   +    TS   ++
Sbjct: 221 LLRQHSNPFSSTLVELMTVFQQTYENVYGIRNGVPVHDVCAVALALWPSLW--TSRSMYV 278

Query: 324 TKSPGSIRLAGTRCKTEGSTRRLPASWIFALQKTERLSW 208
           T S  S+ L  T C       + PA+    L+    L W
Sbjct: 279 TVSLDSLTLGRTVCDVWSQQNQYPANVHVVLEADVSLFW 317


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = -2

Query: 415 EHTHTNTHSFRHNKSTTSEFRRRHEFICTHHQVSGQ 308
           EHTH N+    H  +   +   ++   C H  +S Q
Sbjct: 531 EHTHENSQEHHHEHNHNHDHIHKYNEKCDHESISLQ 566


>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/44 (22%), Positives = 25/44 (56%)
 Frame = +2

Query: 8   QNVADGKTLFRPVRFASVERKQRRRSHHEHKDQRYVQQSVVEPH 139
           Q ++DG T  R   +A  E++++ R   E +++ +   + ++P+
Sbjct: 154 QTMSDGSTSSRYGFYADKEQRKKLREEFERRNRMFASSARIQPN 197


>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 236

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
 Frame = +2

Query: 53  ASVERKQRRRSHHEHKDQRYVQQSVVEPHI*HLHRNATGYGFTARKSVEGTCQESLSVFC 232
           ++V R+ + + H +  D   + + VVEP+   L +    +G       +GT   +     
Sbjct: 15  STVSREFQEKYHIKIIDADVLARKVVEPNTPCLIKIQKEFGNEVLHE-DGTLNRAK--LG 71

Query: 233 KAKIQEAGSRRVLPSVLHRVPASRI-LPGDLVMC 331
           +A  Q+AG R +L S++H  PA R+ +  +L+ C
Sbjct: 72  QAVFQDAGKRSLLNSIIH--PAVRLEMLKELLRC 103


>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 313 GQYSTSWDTVQDRRQHSSATCLLDLCFAENREALLART 200
           G+Y  SWD VQ+  + S    +  L  +  R+ LL  T
Sbjct: 41  GEYQRSWDIVQEDAEGSLVGVIAGLIQSGKRKRLLRDT 78


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +2

Query: 53  ASVERKQRRRSHHEHKDQRYVQQSVVEPHI*HLHRNAT--GYGFTARKSVEGTCQESLSV 226
           ASV+RK+ ++S HEHK  +  + S  +  I    +  +  G   T  +S+E   +E   +
Sbjct: 66  ASVKRKE-KKSKHEHKKHKKDKPSADKDRISKKDKKKSKKGKSKTKEESIEINAEEGAKI 124


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
 Frame = -2

Query: 418 REHTHTNTHSFRHNKSTTSEFR----RRHEFICTH------HQVSGQYSTSWDTVQDRRQ 269
           R  +  N H  +  + T S  R    RRHE   TH      H  +  +S   D  + RR+
Sbjct: 127 RSTSPANRHRRKEKERTRSNHRHGSHRRHEPYRTHLSRHHRHSTTNYHSKRDDRYERRRE 186

Query: 268 HS 263
           HS
Sbjct: 187 HS 188


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 312 GSIRLAGTRCKTEGSTRRLPASWIFALQKTERLSWHV 202
           GSI  AG   + +G  +  P S   A +KT   SW+V
Sbjct: 256 GSISQAGPDGEYQGREQIAPVSDTEAARKTTSQSWYV 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,137,401
Number of Sequences: 5004
Number of extensions: 43326
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)