Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329C05f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0632 - 5069425-5069441,5070656-5070809,5070889-5071050,507... 33 0.14
02_05_0290 - 27571504-27572119,27572211-27572279,27573205-275733... 31 0.56
07_03_1334 + 25864805-25865328,25865592-25865808 29 1.7
10_08_0655 - 19621717-19622594,19623186-19623227,19624323-196244... 29 2.3
08_01_0682 + 5974622-5974745,5976182-5976371,5976953-5977024,597... 29 2.3
10_04_0012 + 7555067-7555867 28 4.0
10_01_0345 - 3811057-3811236,3811342-3811615,3811732-3812289,381... 28 5.2
05_06_0100 - 25576466-25576923,25577552-25577801,25577992-25578204 28 5.2
06_03_0051 - 16023915-16023944,16024025-16024680,16024808-16025300 27 6.9
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 27 6.9
08_01_0183 - 1537906-1539141 27 9.1
06_03_1347 - 29492460-29494685 27 9.1
06_01_0892 - 6827510-6827590,6829348-6830412 27 9.1
>11_01_0632 -
5069425-5069441,5070656-5070809,5070889-5071050,
5071270-5072199
Length = 420
Score = 33.1 bits (72), Expect = 0.14
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +3
Query: 66 ESKGDALTMNTRIRDMCSRALSNLIF-DICTGTLPVTDLPPESLSKVRAKRASLFSAKQR 242
ESK DA +N IR + + NL+ +IC+G+ + DLP L R LF+ +
Sbjct: 114 ESKNDARRVNLWIRSAVASKVRNLVLNNICSGSFELDDLP---LVSRHLTRLELFNLELT 170
Query: 243 SRRQVADEC-CLRSCTVSQLVEYCP 314
+R C L ++ CP
Sbjct: 171 NRFCNFSSCPALEHVKIANSTVSCP 195
>02_05_0290 -
27571504-27572119,27572211-27572279,27573205-27573332,
27573854-27573976
Length = 311
Score = 31.1 bits (67), Expect = 0.56
Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Frame = -2
Query: 376 KSTTSEFRRRHEFICTHHQVSGQYSTSWDTVQDRRQHSSATCLLDLCFAENREALLARTF 197
KSTT E R C +Q GQ S + V D C+ L N + L
Sbjct: 48 KSTTREQRGNKG--CEAYQ-DGQMSLNQSQVHDDDTLEDRVCMASLI--PNTKNLDPSNL 102
Query: 196 DRLSGGKSVTGSV-PVQMSNMRFDNALLHISLILVFMVRASPLLSLN 59
+ + S+ + PVQM+ D HISL+L+ A PLLS++
Sbjct: 103 ENHANCNSIPSLLQPVQMTKANID----HISLVLLTWHIAGPLLSVS 145
>07_03_1334 + 25864805-25865328,25865592-25865808
Length = 246
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 66 ESKGDALTMNTRIRDMCSRALSNLIFDICTGTLPVTDLPPESLSKV 203
+S + L T SRA++NLI D C +P+ ++ ++L+KV
Sbjct: 26 KSNDEKLVEVTEASARQSRAIANLIDDGCADVIPLPNVDSKTLAKV 71
>10_08_0655 -
19621717-19622594,19623186-19623227,19624323-19624479,
19625333-19625405,19625483-19625595
Length = 420
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 143 KYEVRQRSAAHISDPCVHGESVAFAFSQQKQNVQDEIK 30
+Y + +A + S PC G SV S ++NV DE+K
Sbjct: 45 QYTCPRCNARYCSLPCYKGHSVQCTESFMRENVMDELK 82
>08_01_0682 +
5974622-5974745,5976182-5976371,5976953-5977024,
5977482-5977553,5977688-5977759,5977842-5977913,
5978690-5978761,5978855-5978926,5979017-5979091,
5979529-5979594,5979821-5979885,5979975-5980354,
5980438-5980636,5980713-5980763,5980955-5981073,
5981190-5981400,5981524-5981755,5981842-5981992,
5982089-5982447,5982750-5982768
Length = 890
Score = 29.1 bits (62), Expect = 2.3
Identities = 24/71 (33%), Positives = 34/71 (47%)
Frame = +2
Query: 149 LHRNATGYGFTARKSVEGTCQESLSVFCKAKIQEAGSRRVLPSVLHRVPASRILPGDLVM 328
L+ + G K E +E+L V C A + GS PS + RV A IL GD+ +
Sbjct: 769 LYESGQALGIVDPKLKEFNEKEALRVICAALLCTQGSPHQRPS-MSRVMA--ILAGDIEV 825
Query: 329 CANELVTSPEF 361
E+VT P +
Sbjct: 826 --TEVVTKPSY 834
>10_04_0012 + 7555067-7555867
Length = 266
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/65 (26%), Positives = 27/65 (41%)
Frame = -3
Query: 444 NDMFSNSHYGSTHTQTHTVFAITRARLQNSGDVTSSFAHITKSPGSIRLAGTRCKTEGST 265
+DM ++ + + TV AR+ +G + + HI G IR G + GS
Sbjct: 56 DDMVASELWPNKEMAAKTVAMEATARVGENGQIRLPYGHIQSPLGQIRGVGWLRRGSGSG 115
Query: 264 RRLPA 250
PA
Sbjct: 116 EATPA 120
>10_01_0345 -
3811057-3811236,3811342-3811615,3811732-3812289,
3812602-3812747,3812930-3813097,3813896-3814003,
3814859-3815029,3816557-3816949,3817522-3817617,
3817715-3817774,3818600-3818744,3819296-3819520,
3820106-3820254
Length = 890
Score = 27.9 bits (59), Expect = 5.2
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1
Query: 163 YRLRIYRPKVCRRYVPREPLCFLQSKD 243
Y +++Y ++ R + P EPLC ++ +D
Sbjct: 502 YTVKVYDHRIYRYWNPSEPLCHVKDED 528
>05_06_0100 - 25576466-25576923,25577552-25577801,25577992-25578204
Length = 306
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 127 CRTSYLTFAQERYRLRIYRPKVCRRYVPREP 219
CR+ L F ER R Y +CR PR P
Sbjct: 120 CRSCTLRFLAERLRDAGYNSAICRSKWPRSP 150
>06_03_0051 - 16023915-16023944,16024025-16024680,16024808-16025300
Length = 392
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Frame = +3
Query: 66 ESKGDALTMNTRIRDMCSRALSNLIFDICTGTLP--VTDLPPESLSKVRAKRASLFSAKQ 239
+SK AL ++ D+ + + + I T + + E L+ V A R +
Sbjct: 166 DSKSSALVSSSSSLDVDASSSKSSFLAIFNATSDDQLEQIEEEDLALV-ANRIARAMNNA 224
Query: 240 RSRRQVADECCLRSCTVSQLVEYCPE 317
R+R++ CC ++ L +CP+
Sbjct: 225 RNRKRGGPNCCFECSSIDHLRSHCPK 250
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Frame = -2
Query: 418 REHTHTNTHSFRHNKSTTSEFRRRHEFICTHHQ-VSGQYSTSWDTV---QDRRQHS 263
R H H + H RH S H + HHQ + +WD DR+QHS
Sbjct: 534 RHHRHHHDHRHRHGHSHGD---HHHHYHGGHHQRRRHHHPPAWDVEGHHHDRQQHS 586
>08_01_0183 - 1537906-1539141
Length = 411
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 199 RYVPREPLCFLQSKDPGGR 255
RY PR C+L +KD GGR
Sbjct: 285 RYYPRRRPCWLPAKDLGGR 303
>06_03_1347 - 29492460-29494685
Length = 741
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +2
Query: 200 GTCQESLSVFCKAKIQEAGSRRVLPSVLHRVPASRIL 310
G Q L V + K EAG RVLP+ HR IL
Sbjct: 376 GGRQPDLLVTDQCKAMEAGIARVLPNTRHRFCQRNIL 412
>06_01_0892 - 6827510-6827590,6829348-6830412
Length = 381
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 62 ERKQRRRSHHEHKDQRY 112
E+KQR + HH H+ Q Y
Sbjct: 363 EKKQRYQKHHHHRRQEY 379
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,860,329
Number of Sequences: 37544
Number of extensions: 290883
Number of successful extensions: 906
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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