Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329C05f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82090-4|CAB05008.2|  543|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z66564-3|CAA91475.1|  284|Caenorhabditis elegans Hypothetical pr...    27   6.2  
L23645-1|AAK26138.1|  582|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z83231-6|CAI46597.1|  373|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL032647-8|CAI46617.1|  373|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical...    27   8.1  

>Z82090-4|CAB05008.2|  543|Caenorhabditis elegans Hypothetical
           protein ZK337.2 protein.
          Length = 543

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 519 FT*YDLLKTNTNFRNKTIITTCFLINDMFSNSHYGSTHTQTHT 391
           F+  D+L  +          +C   N +FS S + STH +THT
Sbjct: 378 FSRSDMLTRHMRLHTGAKPYSCPTCNQVFSRSDHLSTHLRTHT 420


>Z66564-3|CAA91475.1|  284|Caenorhabditis elegans Hypothetical
           protein F52D10.4 protein.
          Length = 284

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 38  RPVRFASVERKQRRRSH 88
           RP +FA V RKQRR+S+
Sbjct: 121 RPFQFAPVHRKQRRKSY 137


>L23645-1|AAK26138.1|  582|Caenorhabditis elegans Hypothetical
           protein F54F2.5a protein.
          Length = 582

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 50  FASVERKQRRRSHHEHKDQRYVQQSVV 130
           F   E+K+ RR+H + K +R  Q+S+V
Sbjct: 142 FTDQEKKRHRRTHDKKKKERNSQESMV 168


>Z83231-6|CAI46597.1|  373|Caenorhabditis elegans Hypothetical
           protein F57G9.7 protein.
          Length = 373

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +3

Query: 279 SCTVSQLVEYCPETW*CVQMNS*RLLNSEVVLLLWRKLCVFVCVCSRNVNLKT 437
           + T+ QL  +   +    + NS   LN +++  + +K   F   C RNVN  T
Sbjct: 201 TATILQLCSFGVSSGNLTKKNSENCLNFQIIQAIKQKTKYFEKKCERNVNFYT 253


>AL032647-8|CAI46617.1|  373|Caenorhabditis elegans Hypothetical
           protein F57G9.7 protein.
          Length = 373

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +3

Query: 279 SCTVSQLVEYCPETW*CVQMNS*RLLNSEVVLLLWRKLCVFVCVCSRNVNLKT 437
           + T+ QL  +   +    + NS   LN +++  + +K   F   C RNVN  T
Sbjct: 201 TATILQLCSFGVSSGNLTKKNSENCLNFQIIQAIKQKTKYFEKKCERNVNFYT 253


>AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical
           protein W03F11.4 protein.
          Length = 1406

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 226 NREALLARTFDRLSGGKSVTGSVPVQMSNMRFDNAL-LHISLI 101
           N+++  AR F+R +  K+++ S+P   S  R  N + L I LI
Sbjct: 64  NKDSRFARRFNRAASAKTLSDSLPNFKSLARLANGISLEIGLI 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,131,150
Number of Sequences: 27780
Number of extensions: 258572
Number of successful extensions: 852
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)