Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329C01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    27   1.3  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    27   2.2  
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    26   3.0  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    26   3.0  
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    25   6.8  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   6.8  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   6.8  

>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +2

Query: 224 SFRSYKLCSGAWNYQPNMESRTSTIYLAYTAHRVHRALGISLS 352
           S R  K+C       P   S T  IYL       HR +G+ +S
Sbjct: 17  SQRDNKVCFDCGAKNPTWSSTTFGIYLCLDCSAAHRNMGVHIS 59


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 172 DCPRTIVEIAPVLSSCNRTYMDHWGRYCAEHPS 74
           DCP  +V++       N+  M+ W +Y +  PS
Sbjct: 198 DCPLALVDVVTQKQIPNKMDMESWVKYMSLEPS 230


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 61  GYNLQRDAPHNIGPNDPYKFDY 126
           GY L+ DA + I PN+PY F Y
Sbjct: 433 GY-LKVDALYTINPNEPYWFTY 453


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 266 QPNMESRTSTIYLAYTAHRVHRALGISLSNFIKR 367
           +PN   + +  YL  T++ V R LG+++   ++R
Sbjct: 247 EPNYRRKLNKYYLKVTSYYVQRVLGLNVGTPLQR 280


>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/55 (21%), Positives = 25/55 (45%)
 Frame = +1

Query: 1   RTIMNASVALVLCFVLGSAVGYNLQRDAPHNIGPNDPYKFDYTNLGQEQSQRLFW 165
           + + N +   VL  + G +  +NLQ+   +     DP    +T L   ++  ++W
Sbjct: 8   QVMQNETATAVLPLLNGESQSFNLQKHLKYLTKMLDPLPSPFTVLDASRAWMVYW 62


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 4    TIMNASVALVLCFVLGSAVGYNLQRDAPHNIGPNDPYKFDYTNLG 138
            T   + VA+ L F+   A G  LQRD P+ I P   Y+     LG
Sbjct: 956  TADRSKVAVYLDFMFVIA-GERLQRDLPYRIFPKATYQCIQKPLG 999


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 4    TIMNASVALVLCFVLGSAVGYNLQRDAPHNIGPNDPYKFDYTNLG 138
            T   + VA+ L F+   A G  LQRD P+ I P   Y+     LG
Sbjct: 956  TADRSKVAVYLDFMFVIA-GERLQRDLPYRIFPKATYQCIQKPLG 999


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,127,351
Number of Sequences: 5004
Number of extensions: 39815
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)