Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329C01f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0519 - 10150954-10152006 29 1.7
05_04_0234 + 19282196-19282818,19282948-19283347 29 2.3
11_05_0058 + 18719852-18719929,18720032-18720889,18720969-187211... 29 3.0
05_01_0075 + 510893-511288 29 3.0
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 28 5.2
05_07_0084 - 27587307-27589175 27 6.9
03_05_0100 - 20779387-20779641,20779824-20780629,20780757-207810... 27 6.9
08_02_0665 + 19818500-19819013,19819169-19819260,19819435-198200... 27 9.1
07_03_0487 - 18663890-18663964,18664286-18664441,18664693-186652... 27 9.1
>09_02_0519 - 10150954-10152006
Length = 350
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 228 SVLTNYVRAHG-ITNQIWSPEPVRFI*RIRRTECIELWESASAILSNATV 374
S+L + R HG T +WS + +R + R+ T+ + LW++A+ ++ T+
Sbjct: 53 SILDLHGRLHGDSTTTVWS-KGIRSVGRVLHTQPVLLWDNATGAAASFTM 101
>05_04_0234 + 19282196-19282818,19282948-19283347
Length = 340
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = -1
Query: 473 TASSVNATSRPDGANLCPNCPGCGRW*NCG 384
TA+ G CPNC C RW CG
Sbjct: 28 TAARAEQCGAQAGGARCPNCLCCSRWGWCG 57
>11_05_0058 +
18719852-18719929,18720032-18720889,18720969-18721118,
18722248-18722496,18722531-18722575,18722576-18722638
Length = 480
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 257 WNYQPNMESRTSTIYLAYTAHRV-HRALGISLSNFIKRH 370
W + PN+E T + L H+V RA +S N + RH
Sbjct: 55 WRFYPNLEFTTKALGLKKRIHKVQRRAKFVSCVNTVIRH 93
>05_01_0075 + 510893-511288
Length = 131
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -1
Query: 515 GAGWIAGTKGGVTITASSVNATSRPDGANLCPNCPGCGR 399
GAG++ KGG T+ A NA + +CPNC G G+
Sbjct: 92 GAGFVR--KGGATLRA---NAARKDLPQIVCPNCNGLGK 125
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 494 TKGGVTITASSVNATSRPDGANLCPNCPGCGR 399
+K G + S+ T R GA CP C G GR
Sbjct: 34 SKPGAKVKVSAGCKTCRGKGAVECPGCKGTGR 65
>05_07_0084 - 27587307-27589175
Length = 622
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 144 AISTIVLGQSRI*SSRGVWTMVSFNEQVSVLTNYVRAHG 260
A+ TIVL G WT+VS N VS + V HG
Sbjct: 86 ALDTIVLPVDDSAGHAGSWTIVSENSGVSAMHLAVMRHG 124
>03_05_0100 -
20779387-20779641,20779824-20780629,20780757-20781011,
20781107-20781221,20781301-20781353,20781517-20781777,
20782804-20782854,20783081-20783329,20784765-20784990,
20785968-20786132
Length = 811
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Frame = +3
Query: 195 VWTMVSFNEQVSVLTNYVRAHGITNQIWSPEPVRFI*RIR-------RTECIELWESASA 353
++T++S + +VS++ N + ++ + +P + R R +++W
Sbjct: 136 LYTLISRHAKVSLIPNQQAEDELISKYNTGKPQATLRRARWMKELLETNRAVKIWLFLLT 195
Query: 354 ILSNATVLSDAAVLPA 401
IL+ A V+SDA + PA
Sbjct: 196 ILATAMVISDAVLTPA 211
>08_02_0665 +
19818500-19819013,19819169-19819260,19819435-19820056,
19820575-19820775,19821327-19821395,19821428-19821522,
19821608-19822153
Length = 712
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 13 NASVALVLCFVLGSAVGYNLQRDAP-HNIGPN 105
+ S+ VLC +LGS +G++++ P H + N
Sbjct: 505 SVSIIAVLCALLGSVIGFSIRHFYPAHEVSIN 536
>07_03_0487 -
18663890-18663964,18664286-18664441,18664693-18665295,
18665566-18665894,18665992-18666504,18667128-18667242,
18667326-18667397,18667480-18667644,18668604-18668752,
18668830-18668899,18668975-18669121,18669199-18669267,
18669366-18669416,18669537-18669629,18670122-18670211
Length = 898
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 494 TKGGVTITASSVNATSRPDGAN 429
T GG+T T SV T+ P+GAN
Sbjct: 91 TPGGMTNTTFSVPLTTAPEGAN 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,944,021
Number of Sequences: 37544
Number of extensions: 302449
Number of successful extensions: 917
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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