Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329C01f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin pr... 30 0.87
Z99709-12|CAI79146.1| 349|Caenorhabditis elegans Hypothetical p... 28 3.5
Z99709-11|CAB16861.1| 347|Caenorhabditis elegans Hypothetical p... 28 3.5
Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical p... 28 3.5
U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical p... 28 3.5
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr... 27 6.2
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 27 8.1
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 27 8.1
AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin ... 27 8.1
AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin ... 27 8.1
AF016687-6|AAC48092.3| 309|Caenorhabditis elegans Serpentine re... 27 8.1
>X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin
protein.
Length = 1651
Score = 30.3 bits (65), Expect = 0.87
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 175 LDCPRTIVEIAPVLSSCNRTYMDHWGRYCAEH 80
L+ P T+ I VL CN ++ R+ AEH
Sbjct: 368 LEAPHTVARIVKVLRECNEEQLEQIYRHVAEH 399
>Z99709-12|CAI79146.1| 349|Caenorhabditis elegans Hypothetical
protein C47B2.6b protein.
Length = 349
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 235 LQTMFGRMELPTKYGVPNQYDLSSVYGAPS 324
L+ + GR ++P K GVP D++SVY PS
Sbjct: 287 LKKVSGR-DIPVKIGVPRPGDVASVYCDPS 315
>Z99709-11|CAB16861.1| 347|Caenorhabditis elegans Hypothetical
protein C47B2.6a protein.
Length = 347
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 235 LQTMFGRMELPTKYGVPNQYDLSSVYGAPS 324
L+ + GR ++P K GVP D++SVY PS
Sbjct: 285 LKKVSGR-DIPVKIGVPRPGDVASVYCDPS 313
>Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical
protein Y69H2.10b protein.
Length = 975
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -1
Query: 92 LCGASLCRLYPTALPRTKHNTRATD 18
+CG CR T LP T H TD
Sbjct: 630 ICGEPPCRSMATCLPTTNHTVNITD 654
>U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical
protein C34D4.14 protein.
Length = 2761
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 433 RTSAQTVQAADAGKTAASDKTVAFDKIAEADSQ 335
+ SA+T ADA +T + DKTV D E D +
Sbjct: 1844 QASAETDGDADADETNSEDKTVGADDAMEEDDE 1876
>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical
protein W05B2.2 protein.
Length = 1278
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = -2
Query: 241 FVRTETCSLNETIVQTPRLD*ILDCPRTIVEIAPVLSSCNRTYMDHWGRYCAEHPS 74
F ++ +CS +E I Q LD DC ++ P SC ++ D C P+
Sbjct: 664 FCQSASCSSSEVIYQPSNLDEPFDCS---LKTCPRHFSCVKSVWDETKNVCCGSPN 716
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Frame = -2
Query: 481 LQSQRRQ*TLHHDPTERTSAQTVQAA--------DAGKTAASDKTVAFDKIAEADSQSSM 326
L+S+R +H P+E ++ ++A D+G++ SD+++ + E+DS+
Sbjct: 1939 LKSERSIPEIHTSPSEEQQSEHFESAEHTEDQGRDSGRSLKSDRSIPEVQFTESDSELEK 1998
Query: 325 HSV 317
H +
Sbjct: 1999 HDL 2001
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Frame = -2
Query: 481 LQSQRRQ*TLHHDPTERTSAQTVQAA--------DAGKTAASDKTVAFDKIAEADSQSSM 326
L+S+R +H P+E ++ ++A D+G++ SD+++ + E+DS+
Sbjct: 1939 LKSERSIPEIHTSPSEEQQSEHFESAEHTEDQGRDSGRSLKSDRSIPEVQFTESDSELEK 1998
Query: 325 HSV 317
H +
Sbjct: 1999 HDL 2001
>AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 6, isoform
a protein.
Length = 1650
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 175 LDCPRTIVEIAPVLSSCNRTYMDHWGRYCAEH 80
L+ T+ I VL CN ++ R+ AEH
Sbjct: 368 LEAAHTVARIVKVLRECNEEQLEQIYRHVAEH 399
>AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 6, isoform
c protein.
Length = 1651
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 175 LDCPRTIVEIAPVLSSCNRTYMDHWGRYCAEH 80
L+ T+ I VL CN ++ R+ AEH
Sbjct: 368 LEAAHTVARIVKVLRECNEEQLEQIYRHVAEH 399
>AF016687-6|AAC48092.3| 309|Caenorhabditis elegans Serpentine
receptor, class h protein282 protein.
Length = 309
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +1
Query: 205 WSHLTNKFPFLQTMFG-RMELPTKYGVPNQY 294
W H+ F FG LPT Y +P+QY
Sbjct: 127 WRHVRYPFKVFNITFGVAFYLPTYYAMPDQY 157
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,035,646
Number of Sequences: 27780
Number of extensions: 239979
Number of successful extensions: 726
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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