Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329B12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    31   0.14 
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    26   3.0  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    25   5.2  
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.0  

>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = -1

Query: 368  LGNVNILRYLSLAYPTII-PYDHNDHIVDNLLDICHVLER-TSEKNKEAVVNRLFAHFK 198
            +G + IL  L ++ P ++  Y+H+D I  +L   CH L    S+ N +A++  L  + K
Sbjct: 1745 VGYLRILSCLLVSLPAMVYTYEHSDPITFDLSVFCHKLATLASQFNDDALIELLDTYLK 1803


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
 Frame = -1

Query: 440 VNLRLIFKAAADSELKLSALSTPILGNVNILRYLSL-----AYPTIIPYDHNDHIVDNLL 276
           V L+   +A    E    A+  P++   N+L +        AYPT   YD    IVD+L 
Sbjct: 341 VGLKNCIRAKISYENPNKAMRDPVIYRCNLLPHHRTGTKYRAYPT---YDFACPIVDSLE 397

Query: 275 DICHVLERTSEKNK 234
            + H L  T  +++
Sbjct: 398 GVTHALRTTEYRDR 411


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -1

Query: 269 CHVLERTSEKNKEAVVNRLFAHFKTWIYG 183
           CHV ++  E  ++++V+ +F HF   + G
Sbjct: 378 CHVWQKFFETRRKSLVDGIFDHFNKKMQG 406


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 177 FVTINPSFKVSEKPIYNCF 233
           F T+NP+F++S  P  N F
Sbjct: 79  FDTLNPAFRISSCPSSNAF 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,945,569
Number of Sequences: 5004
Number of extensions: 37483
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)