Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329B12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0708 - 5298456-5298664,5299615-5299768,5300209-5300301,530...    30   0.98 
11_01_0782 + 6543906-6544702,6545717-6547850                           29   2.3  
12_01_0654 - 5542349-5542480,5542491-5542666,5542835-5542937,554...    27   6.9  
11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008     27   9.1  

>02_01_0708 -
           5298456-5298664,5299615-5299768,5300209-5300301,
           5300644-5300847,5302034-5302174,5302723-5302827,
           5303485-5303874,5304573-5304713,5304756-5304845,
           5305779-5306288
          Length = 678

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -1

Query: 245 EKNKEAVVNRLFAHFKTWIYGDK-FSVVDLA 156
           +  K+ + N L A FK W+YG+K  SV+++A
Sbjct: 590 DNRKKELTNALHAQFKDWLYGNKRKSVLEMA 620


>11_01_0782 + 6543906-6544702,6545717-6547850
          Length = 976

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = -1

Query: 461 KTSENPK--VNLRLIFKAA-ADSELKLSALSTPILGNVNILRYLSLAYPTIIPYDHNDHI 291
           K  E+PK  V LR + +   + S  KL+      L N+  L+YL L    +  +   D+ 
Sbjct: 758 KLLESPKFVVLLRGLQELCISSSATKLTTGLLSALSNLRKLKYLKLIADQLEEFIIKDNA 817

Query: 290 VDNLLDICHVLER 252
           + +LL +C VL R
Sbjct: 818 LPSLLSLCFVLNR 830


>12_01_0654 -
           5542349-5542480,5542491-5542666,5542835-5542937,
           5542971-5543084,5543104-5543163,5543258-5544316
          Length = 547

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
 Frame = -1

Query: 353 ILRYLSLAYPTIIPYDH-NDHIVDNLLDICH--VLERTSEKNKEAVVNRLFAHFKTWIYG 183
           I++ ++L+ P+   YD   +H+   L  I +  +L+   E  + +   +LFA  +T +YG
Sbjct: 276 IIQSVTLSKPSFDTYDALQEHLARTLETIKYLLILDDVWEDKEISEWEKLFASLRTGVYG 335

Query: 182 DKF-------SVVDLAAYNLIKQWRNTPKFVSKV 102
            K        SV DLA+  + K  +N  K   K+
Sbjct: 336 RKILLTTRMQSVADLAS-AIPKNLKNYKKLEKKL 368


>11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008
          Length = 1058

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
 Frame = -1

Query: 512 SVPSEKLAKIKAFTQKLKTSENPKVNLRL-IFKAAADSELKLSALSTPI---LGNVNILR 345
           S+PS  LA +     K    +N     ++   K      L  + +S+ I   +GN++ L+
Sbjct: 455 SIPSSLLANLSINLLKFFAEDNNLTGRQIGTLKGMVTLSLGGNKISSSIPNGVGNLSTLQ 514

Query: 344 YLSLAYPTIIPYDHNDHI-VDNL--LDICH 264
           YLSL+Y  +  Y     + + NL  LDI H
Sbjct: 515 YLSLSYNWLSSYIPASLVNLSNLLQLDISH 544


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,119,690
Number of Sequences: 37544
Number of extensions: 197343
Number of successful extensions: 495
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)