Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329B12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L12018-11|AAA65467.1|  348|Caenorhabditis elegans Hypothetical p...    29   2.7  
Z70271-2|CAA94236.2| 1256|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AC087081-10|AAK66035.1|  326|Caenorhabditis elegans Hypothetical...    27   6.2  
Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z37092-8|CAA85460.2|  327|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U41991-9|AAA83349.1|  297|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AY037792-1|AAK94756.1|  327|Caenorhabditis elegans SRA-12 protein.     27   8.1  
AL033514-24|CAA22108.1| 2121|Caenorhabditis elegans Hypothetical...    27   8.1  
AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear recep...    27   8.1  
AF332204-1|AAK17975.1|  519|Caenorhabditis elegans nuclear recep...    27   8.1  

>L12018-11|AAA65467.1|  348|Caenorhabditis elegans Hypothetical
           protein F22B7.1 protein.
          Length = 348

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -1

Query: 281 LLDICHVLERTSEKNKEAVVNRLFAHFKTWIYGDK 177
           L+D   + +++SE  K ++  RL+ +   W+YG K
Sbjct: 173 LIDQMAIQQKSSETEKMSIWARLWENLSVWMYGKK 207


>Z70271-2|CAA94236.2| 1256|Caenorhabditis elegans Hypothetical
           protein W08D2.5 protein.
          Length = 1256

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 344 YLSLAYPTIIPYDHN-DHIVDNLLDICHVLERTSEKNKEAVVNRL 213
           +L+++ PT     H    +VD L  +C V  R +   K+++V +L
Sbjct: 824 HLAISGPTFAVIVHEYPELVDQLCSVCDVFARMAPDQKQSLVEQL 868


>AC087081-10|AAK66035.1|  326|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.8 protein.
          Length = 326

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -1

Query: 359 VNILRYLSLAYPTII--PYDHNDHIVDNLLDICHVLERTSEKNKEAVVNRLFAHFK 198
           + ++  L+  YPT++  P +  DH+++ L  I  +  R   +N    V+ L  HFK
Sbjct: 25  IRLMSGLTPVYPTLVDLPSEIIDHVLEKLEHIDRLPCRKVCRNLRYAVDELGLHFK 80


>Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical
           protein ZK662.3b protein.
          Length = 817

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -1

Query: 278 LDICHVLERTSEKNKEAVVN--RLFAHFKTWIYGDKFSVVDLAAYN-LIKQW 132
           LD   +L+  S+KN E +VN  +L + F+     DK SVV    +N  + +W
Sbjct: 651 LDSMPILDLFSKKNVEKIVNGLKLLSSFRFLPQVDKRSVVKRGLFNYCVVKW 702


>Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical
           protein ZK662.3a protein.
          Length = 780

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -1

Query: 278 LDICHVLERTSEKNKEAVVN--RLFAHFKTWIYGDKFSVVDLAAYN-LIKQW 132
           LD   +L+  S+KN E +VN  +L + F+     DK SVV    +N  + +W
Sbjct: 614 LDSMPILDLFSKKNVEKIVNGLKLLSSFRFLPQVDKRSVVKRGLFNYCVVKW 665


>Z37092-8|CAA85460.2|  327|Caenorhabditis elegans Hypothetical
           protein F44F4.7 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -1

Query: 242 KNKEAVVNRLFAHFKTWIYGDKFSVVDLAAYNLIKQW 132
           KN+E +   ++ +   W+Y   ++ V LA   L   W
Sbjct: 258 KNRENIPTLIYFNVIVWVYAPPYACVSLAPLILFSLW 294


>U41991-9|AAA83349.1|  297|Caenorhabditis elegans Hypothetical
           protein C42D4.11 protein.
          Length = 297

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -1

Query: 155 AYNLIKQWRNTPKFVSKVWFDKCEK 81
           AY+L++++ + PK   ++W D   K
Sbjct: 183 AYSLVERYPSQPKITERIWIDGVRK 207


>AY037792-1|AAK94756.1|  327|Caenorhabditis elegans SRA-12 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -1

Query: 242 KNKEAVVNRLFAHFKTWIYGDKFSVVDLAAYNLIKQW 132
           KN+E +   ++ +   W+Y   ++ V LA   L   W
Sbjct: 258 KNRENIPTLIYFNVIVWVYAPPYACVSLAPLILFSLW 294


>AL033514-24|CAA22108.1| 2121|Caenorhabditis elegans Hypothetical
           protein Y75B8A.24 protein.
          Length = 2121

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -2

Query: 121 LSLSLKCGLINVKNYVLNSH 62
           LS +++C LI + NY+L+SH
Sbjct: 63  LSHNVRCSLIAIANYLLHSH 82


>AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 817

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -1

Query: 278 LDICHVLERTSEKNKEAVVN--RLFAHFKTWIYGDKFSVVDLAAYN-LIKQW 132
           LD   +L+  S+KN E +VN  +L + F+     DK SVV    +N  + +W
Sbjct: 651 LDSMPILDLFSKKNVEKIVNGLKLLSSFRFLPQVDKRSVVKRGLFNYCVVKW 702


>AF332204-1|AAK17975.1|  519|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 519

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -1

Query: 278 LDICHVLERTSEKNKEAVVN--RLFAHFKTWIYGDKFSVVDLAAYN-LIKQW 132
           LD   +L+  S+KN E +VN  +L + F+     DK SVV    +N  + +W
Sbjct: 353 LDSMPILDLFSKKNVEKIVNGLKLLSSFRFLPQVDKRSVVKRGLFNYCVVKW 404


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,443,745
Number of Sequences: 27780
Number of extensions: 195957
Number of successful extensions: 531
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)