Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329B11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    27   1.3  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    27   2.2  
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    26   3.0  
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po...    26   3.9  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    26   3.9  
SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr ...    25   5.2  
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    25   6.8  
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    25   9.0  

>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = -3

Query: 441 RRSRGQRYRTASRSAPCRLGDLSEPSGTRSNLTSKGNRSPQSPLDVCPQK 292
           RRS   RYR+ SRS     G    P   R +   + +RSP SP+   PQK
Sbjct: 136 RRSMSPRYRSRSRSPD---GRSRSPDYDRRS-PKRNHRSP-SPVSFAPQK 180


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +3

Query: 228 CDKYWECDN--GQSVQYDCPNGLV 293
           CD+ W C+N   + +   CPNG++
Sbjct: 32  CDRVWPCENCKKRGIPNLCPNGIL 55


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 34  NTNNIFDECVLPVSN*ILSKNIYIQCLDD 120
           NT+NI  +  LPV   +L K+ ++ C  D
Sbjct: 390 NTDNIIRKSFLPVLRTLLEKSNHLHCYQD 418


>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 178 SRTRARPKLE*WPMTNTATSIGNVTTDNRYNTTAPMDL 291
           SRT + P ++      + T   N++T+ R  TT+P+DL
Sbjct: 127 SRTESEPNVQ-----ISDTDFDNISTEPRNQTTSPLDL 159


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
 Frame = +3

Query: 216 DDKYCDKYWEC------DNGQSVQYDCPNGLVFAGKHRGVTEGC 329
           D+ Y D+YWE       D       D  N ++FAGK+  V   C
Sbjct: 324 DEDYTDEYWEKRYVIREDQVPPQLLDLQNKVLFAGKYLNVVLEC 367


>SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 238

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +3

Query: 129 SVLVILAAINLTSCAQIEDPCK-TKARIVADDKYCDKYWE 245
           S   I+ A N+    Q  D  K  +  I+ D K+C K W+
Sbjct: 102 SEAAIVLAKNIARHRQFSDKVKFQQLDIIKDSKFCSKDWD 141


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 411 LYGIFGHETSCTRYWTCWNGTATEQLCIGGLLYNENA 521
           L  + GHE++      C +   TE++ +  L+YNE A
Sbjct: 360 LISLLGHESNVPVIACCESYKFTERIQLDSLVYNELA 396


>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 160 RFMAARITRTLVQRRPNIVYICSL 89
           RF A R    L   RP++V+ C+L
Sbjct: 324 RFSAIRTLNELAMTRPHLVHSCNL 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,248,076
Number of Sequences: 5004
Number of extensions: 48876
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)