Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329B11f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p... 38 0.003
U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical pr... 37 0.008
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr... 35 0.031
U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase prote... 32 0.29
U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass... 31 0.38
AL034393-6|CAA22321.1| 507|Caenorhabditis elegans Hypothetical ... 30 1.2
U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical pr... 29 2.0
DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin p... 29 2.0
U80437-8|AAB37623.1| 630|Caenorhabditis elegans Exocyst compone... 28 3.5
U58764-1|AAB00723.2| 191|Caenorhabditis elegans Hypothetical pr... 28 3.5
AC084153-13|AAK84583.1| 123|Caenorhabditis elegans Hypothetical... 28 3.5
Z81540-5|CAB04405.2| 946|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z95310-2|CAB08563.1| 394|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z83104-6|CAB05479.1| 394|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z92835-4|CAE54910.1| 1135|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z92835-3|CAB07397.1| 1130|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z92835-2|CAB07396.1| 1133|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z48809-2|CAA88747.1| 406|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z35604-2|CAA84677.1| 809|Caenorhabditis elegans Hypothetical pr... 27 8.1
U19744-1|AAA85704.1| 809|Caenorhabditis elegans integrin beta p... 27 8.1
>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
protein C39D10.7 protein.
Length = 1185
Score = 38.3 bits (85), Expect = 0.003
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Frame = +3
Query: 237 YWECDNGQSVQYDCPNGLVFAGKHRGVTEGCDYPWRSNYCEYPKA--QINPPIGTEHCDW 410
Y+ C + Q + CPN L F+ + +E C +P + C + P + ++ C
Sbjct: 971 YFSCIDEQIRKMSCPNSLKFSKE----SEKCVFPIDAKECSIATTLDRTPPAVPSDFCTI 1026
Query: 411 LYGIFGHETSCT-RYWTCWNGTATEQLCIGGLLYN 512
H C+ Y C NG A CI L+YN
Sbjct: 1027 RSNGLHHLKMCSPHYIVCDNGRAFSGTCIAPLVYN 1061
Score = 28.7 bits (61), Expect = 2.7
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +3
Query: 216 DDKYCDKY-WECDNGQSVQYDCPNGLVF 296
D+ C Y W+C NG+ + CP L++
Sbjct: 213 DNVKCSPYFWQCSNGKLFRKTCPEKLIY 240
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +3
Query: 228 CDKYW-ECDNGQSVQYDCPNGLVFAGKHRGVTEGCDYPWRSNYCEYPKAQINPPIGTEHC 404
C+KY +C N ++ ++ CP+GL ++ + + CD C K + E
Sbjct: 701 CEKYLIKCYNRKTFKFPCPSGLYYS----RLQDKCDVKENVEGCPEYKPTTDATPAAEQP 756
Query: 405 DWLYGIFGHETSCTR 449
Y +G+ S T+
Sbjct: 757 VISYQNYGYSQSTTK 771
>U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical
protein R02F2.4 protein.
Length = 431
Score = 37.1 bits (82), Expect = 0.008
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Frame = +3
Query: 246 CDNGQSVQYDCPNGLVFAGKHRGVTEGCDYPWRSNYCE---------YPKAQINPPIGTE 398
C NG + CP+GL+F+ K+ + CDY W + C+ Y ++ P T
Sbjct: 258 CTNGIPIVMFCPDGLMFSEKN----QMCDYEWNVDECDLESSGFMENYKASEALTPC-TN 312
Query: 399 HCDWLYGIFGHETSCT-RYWTCWNGTATEQLCIGGLLYNENA 521
+ LY + CT R +C NG C L++NEN+
Sbjct: 313 MDNGLYAL-----DCTPRVLSCQNGRENIFECPPSLVFNENS 349
Score = 36.7 bits (81), Expect = 0.010
Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Frame = +3
Query: 159 LTSCAQIE-DPCKTKARIVADDKYCDKYWECDNGQSVQYDCPNGLVFAGKHRGVTEGCDY 335
+ C+Q+ + C++ I + + + ++ C G + + +CP LVF CD+
Sbjct: 168 IDECSQVSGEYCESDGNI-SKSECSNVFFSCSEGIAHRRNCPANLVF----NPAISSCDW 222
Query: 336 PWRSNYCEYPKAQINPPIGTEHCDWLYGIFGHETSCTRYWTCWNGTATEQLCIGGLLYNE 515
P N + + P ++C + G F + + C NG C GL+++E
Sbjct: 223 P--KNVMDCSEKSEKP----QNCGEVDGYFSFGRCSSSFSACTNGIPIVMFCPDGLMFSE 276
>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical protein
H02I12.1 protein.
Length = 1319
Score = 35.1 bits (77), Expect = 0.031
Identities = 19/74 (25%), Positives = 29/74 (39%)
Frame = +3
Query: 174 QIEDPCKTKARIVADDKYCDKYWECDNGQSVQYDCPNGLVFAGKHRGVTEGCDYPWRSNY 353
Q C +AD C+ ++ C G+ V CP+G VF + CD+P
Sbjct: 1240 QTNGECSEHGSFIADANNCEVFYRCVWGRKVVMTCPSGTVF----NPLLSVCDWPSAVPS 1295
Query: 354 CEYPKAQINPPIGT 395
C + N G+
Sbjct: 1296 CSGQASDSNSSYGS 1309
Score = 29.9 bits (64), Expect = 1.2
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
Frame = +3
Query: 216 DDKYCDKYWECDNGQSVQY-DCPNGLVFAGKHRGVTEGCDYPWRSNYCEYPKAQINPPIG 392
+++ C +C G+ ++ C + L F +T CDYP + + CE Q N
Sbjct: 1192 NERDCSAILQCFGGELFEHPSCQSSLAF----NQLTGKCDYPQKVSGCE-NHGQTNGEC- 1245
Query: 393 TEHCDWLYGIFGHETSCTRYWTCWNGTATEQLCIGGLLYN 512
+EH ++ +C ++ C G C G ++N
Sbjct: 1246 SEHGSFI----ADANNCEVFYRCVWGRKVVMTCPSGTVFN 1281
Score = 29.5 bits (63), Expect = 1.5
Identities = 24/89 (26%), Positives = 32/89 (35%)
Frame = +3
Query: 162 TSCAQIEDPCKTKARIVADDKYCDKYWECDNGQSVQYDCPNGLVFAGKHRGVTEGCDYPW 341
TS A I D C A + KY +C NG ++ C L F T+ C Y
Sbjct: 683 TSAAPIGDRCSLDASGLFSLGCSQKYIQCSNGAAIVRRCGESLYF----NEATQECTYRD 738
Query: 342 RSNYCEYPKAQINPPIGTEHCDWLYGIFG 428
C + +P I T D +G
Sbjct: 739 EVPECGSQGSTSSPVITTPGQDQSSNYYG 767
>U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase protein
1 protein.
Length = 617
Score = 31.9 bits (69), Expect = 0.29
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 228 CDKYWECDNGQSVQYDCPNGLVF 296
C K+ C NG S ++CPNGL F
Sbjct: 578 CLKFIRCVNGISYNFECPNGLSF 600
>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily assigned
gene nameprotein 162 protein.
Length = 2643
Score = 31.5 bits (68), Expect = 0.38
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
Frame = +3
Query: 159 LTSCAQIEDPCKTKARIVADDKYCDKYWECDNGQSVQYDCPNG-LVFAGKHRGVTEGCDY 335
+ C+ + C +K + + K C+ ECDNG + DCP L + R T C
Sbjct: 1010 IVKCSVSQFQC-SKTKCIIKSKRCNGVQECDNGAD-EEDCPRSKLCDPDEFRCGTGLCIK 1067
Query: 336 PWRSNYCEYPKAQINPPIGTEHCDWLYGIFGHETSCT--RYWTCWNGTAT 479
+S C+ K Q + EHC+ E C R + C NG +T
Sbjct: 1068 --QSQVCD-GKMQCLDGLDEEHCN-------EEEKCLQGRQFRCANGKST 1107
>AL034393-6|CAA22321.1| 507|Caenorhabditis elegans Hypothetical
protein Y18D10A.8 protein.
Length = 507
Score = 29.9 bits (64), Expect = 1.2
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = -3
Query: 489 KAAPWRCRSSRSNTWCRRSRGQRYRTASRSAPCRLGDLSEPSGTRSNLTSKGNRSPQSPL 310
+A WR + S + R GQ + P S P+ S++TS SPQ P+
Sbjct: 109 RAMNWRTNLAHSQYYVNRPEGQHDPAPTVGIPPSA--TSPPTQVTSSVTSPVPSSPQPPM 166
Query: 309 DVCPQ 295
PQ
Sbjct: 167 QFVPQ 171
>U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical
protein B0280.5 protein.
Length = 524
Score = 29.1 bits (62), Expect = 2.0
Identities = 23/84 (27%), Positives = 30/84 (35%), Gaps = 2/84 (2%)
Frame = +3
Query: 246 CDNGQSVQYDCPNGLVFAGKHRGVTEGCDYPWRSNYCEYPKAQI--NPPIGTEHCDWLYG 419
C NG ++CP+ LVF + + CDYP S C + PI C G
Sbjct: 422 CQNGHVDIFECPSSLVFNDQ----SLICDYPQTSLKCLIEDTILIDETPIAAFDCS-TDG 476
Query: 420 IFGHETSCTRYWTCWNGTATEQLC 491
+F Y C G C
Sbjct: 477 LFSDGLCSATYHQCTAGQLINFTC 500
>DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin
proteoglycan-2 protein.
Length = 524
Score = 29.1 bits (62), Expect = 2.0
Identities = 23/84 (27%), Positives = 30/84 (35%), Gaps = 2/84 (2%)
Frame = +3
Query: 246 CDNGQSVQYDCPNGLVFAGKHRGVTEGCDYPWRSNYCEYPKAQI--NPPIGTEHCDWLYG 419
C NG ++CP+ LVF + + CDYP S C + PI C G
Sbjct: 422 CQNGHVDIFECPSSLVFNDQ----SLICDYPQTSLKCLIEDTILIDETPIAAFDCS-TDG 476
Query: 420 IFGHETSCTRYWTCWNGTATEQLC 491
+F Y C G C
Sbjct: 477 LFSDGLCSATYHQCTAGQLINFTC 500
>U80437-8|AAB37623.1| 630|Caenorhabditis elegans Exocyst component
protein 7 protein.
Length = 630
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/59 (23%), Positives = 32/59 (54%)
Frame = -1
Query: 380 IYLSLRVLAVI*PPRVIAALSHPSMFARKNKSIGAVVLYRLSVVTFPILVAVFVIGHYS 204
+ ++ VLA+ P L P +FAR ++G+++ + ++ P L +F++ +Y+
Sbjct: 427 VTVTQHVLALTAPQGSNTNLLLPKLFARILSALGSMLKKKANLYDDPTLATIFLLNNYN 485
>U58764-1|AAB00723.2| 191|Caenorhabditis elegans Hypothetical
protein M03E7.4 protein.
Length = 191
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 156 NLTSCAQIEDPCKTKARIVADDKYCDKYWECDNGQSVQYDC 278
N C E CK + ++ D+ C+ ECD+G + DC
Sbjct: 151 NCPLCTAGEFACKVSEQCISLDRRCNGLIECDDGTD-ERDC 190
>AC084153-13|AAK84583.1| 123|Caenorhabditis elegans Hypothetical
protein Y22D7AL.1 protein.
Length = 123
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1
Query: 251 VTFPILVAVFVIGHYSSFGLA 189
V I+V VF+IG+YS +G+A
Sbjct: 84 VLLKIVVIVFIIGYYSKYGVA 104
>Z81540-5|CAB04405.2| 946|Caenorhabditis elegans Hypothetical
protein F46B3.5 protein.
Length = 946
Score = 27.9 bits (59), Expect = 4.7
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -2
Query: 208 ILALVLHGSSIWAHDVRFMAARITRTLVQRRPNIVY--ICSLIKFSSKQATHTRRKC 44
IL + S HD R++A ITR VQRR N + I + FS T R C
Sbjct: 557 ILDEARYSDSYHKHDTRYLAKMITRA-VQRRFNTTFETIVAEADFSWSTNKFTGRMC 612
>Z95310-2|CAB08563.1| 394|Caenorhabditis elegans Hypothetical
protein F09B12.5 protein.
Length = 394
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 165 SCAQIEDPCKTKARIVADDKYCDKYWECDNG 257
+CA + CK+ + +K CD ++CD G
Sbjct: 147 NCASEDYICKSSGLCLKPNKICDGKFDCDGG 177
>Z83104-6|CAB05479.1| 394|Caenorhabditis elegans Hypothetical
protein F09B12.5 protein.
Length = 394
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 165 SCAQIEDPCKTKARIVADDKYCDKYWECDNG 257
+CA + CK+ + +K CD ++CD G
Sbjct: 147 NCASEDYICKSSGLCLKPNKICDGKFDCDGG 177
>Z92835-4|CAE54910.1| 1135|Caenorhabditis elegans Hypothetical
protein H19N07.2c protein.
Length = 1135
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = -3
Query: 312 LDVCPQKQVHW----GSRIVPIVRCHIPNTCRSICHRPL 208
L+V P+K + W GSR P ++ NTC+ + RP+
Sbjct: 849 LNVDPKKVLIWTRVSGSRFEPFFDDYMLNTCKGLMTRPV 887
>Z92835-3|CAB07397.1| 1130|Caenorhabditis elegans Hypothetical
protein H19N07.2b protein.
Length = 1130
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = -3
Query: 312 LDVCPQKQVHW----GSRIVPIVRCHIPNTCRSICHRPL 208
L+V P+K + W GSR P ++ NTC+ + RP+
Sbjct: 849 LNVDPKKVLIWTRVSGSRFEPFFDDYMLNTCKGLMTRPV 887
>Z92835-2|CAB07396.1| 1133|Caenorhabditis elegans Hypothetical
protein H19N07.2a protein.
Length = 1133
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = -3
Query: 312 LDVCPQKQVHW----GSRIVPIVRCHIPNTCRSICHRPL 208
L+V P+K + W GSR P ++ NTC+ + RP+
Sbjct: 849 LNVDPKKVLIWTRVSGSRFEPFFDDYMLNTCKGLMTRPV 887
>Z48809-2|CAA88747.1| 406|Caenorhabditis elegans Hypothetical
protein T01E8.4 protein.
Length = 406
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +3
Query: 393 TEHCDWLYGIFGHETSCTRYWTCWNGTATE-QLCIGGLLYNENA 521
T H W++ + TS Y T W+ T + G L N N+
Sbjct: 155 TAHSGWIWNMAQESTSTNFYTTSWDSTVKSWHITDNGALQNLNS 198
>Z35604-2|CAA84677.1| 809|Caenorhabditis elegans Hypothetical
protein ZK1058.2 protein.
Length = 809
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +3
Query: 180 EDPCKTKARIVADDKYCDKYWECDNGQSVQYDCPNGLVFAGKHRGVTEGC 329
E P T + + A+ K C+ EC G+ +D P+G ++G + C
Sbjct: 601 ECPISTDSCLSANGKICNGKGECICGRCRCFDSPDGNRYSGAKCEICPTC 650
>U19744-1|AAA85704.1| 809|Caenorhabditis elegans integrin beta
pat-3 protein.
Length = 809
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +3
Query: 180 EDPCKTKARIVADDKYCDKYWECDNGQSVQYDCPNGLVFAGKHRGVTEGC 329
E P T + + A+ K C+ EC G+ +D P+G ++G + C
Sbjct: 601 ECPISTDSCLSANGKICNGKGECICGRCRCFDSPDGNRYSGAKCEICPTC 650
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,803,483
Number of Sequences: 27780
Number of extensions: 298280
Number of successful extensions: 1005
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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