Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329B11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    23   2.5  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    23   2.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   3.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   3.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   4.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   4.4  

>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 318 TEGCDYPWRSNYCEY 362
           TEGC+  W+   C Y
Sbjct: 122 TEGCEVAWQFGKCIY 136


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 318 TEGCDYPWRSNYCEY 362
           TEGC+  W+   C Y
Sbjct: 96  TEGCEVAWQFGKCIY 110


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +3

Query: 327 CDYPWRSNYCEYPKAQINPPIGTEHCD 407
           C  PW + YC  P  ++     T+  D
Sbjct: 139 CGNPWNTRYCLTPTERLEALCWTQDED 165


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +3

Query: 327 CDYPWRSNYCEYPKAQINPPIGTEHCD 407
           C  PW + YC  P  ++     T+  D
Sbjct: 192 CGNPWNTRYCLTPTERLEALCWTQDED 218


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 269 LYRLSVVTFPILVAVFVIGHYSSFGL 192
           LY+LS + F ++  VF+   Y   GL
Sbjct: 205 LYQLSCILFFLIPMVFIAVLYIRIGL 230


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -2

Query: 325 PSVTPRCLPAKTSPLGQSYCTDCP 254
           PS    C P   + + +  CT+CP
Sbjct: 243 PSGGCHCKPGYQADVEKQECTECP 266


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,073
Number of Sequences: 438
Number of extensions: 3446
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)