Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329B09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   0.97 
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    27   2.2  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   3.0  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   6.8  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    25   9.0  
SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1 ...    25   9.0  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    25   9.0  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +1

Query: 157 STPITRVSSSQMS*TI*YETTR*TAWSTPTSSGCKAPRTSSGIVSRLSSHLS 312
           ST  +  SSS  S T+   ++  ++  T +SS    P +SS   S LSSH S
Sbjct: 357 STTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKS 408


>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = +3

Query: 87  LAEHLYNDVIIADYDSAVERSK----LIYTDNKGELITNVVNNLIRNNKMNCMEYAYQLW 254
           LAE   +  +  D +S  E  K    LI    K  L ++    +++ NK+N +E A Q W
Sbjct: 110 LAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNW 169


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = +1

Query: 235 STPTSSGCKAPRTSSGIVSRLSSHLS*LKTMLSLCTGETVSLLH*ATMAGLPTGTAKTGP 414
           STP S+    P + S   SRLSS L+      S+   ET      +     PTG++  G 
Sbjct: 730 STPLSNSSAYPSSGSSTFSRLSSTLT-----SSIIPTETFGSTSGSATGTRPTGSSSQGS 784

Query: 415 V 417
           V
Sbjct: 785 V 785



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 26/93 (27%), Positives = 40/93 (43%)
 Frame = +1

Query: 160 TPITRVSSSQMS*TI*YETTR*TAWSTPTSSGCKAPRTSSGIVSRLSSHLS*LKTMLSLC 339
           T  +  SSS  S ++   +T  T  +TPTSS      TSS + S  +S+ +   ++ S  
Sbjct: 145 TSSSLASSSTTSSSLASSSTNSTTSATPTSSA-----TSSSLSSTAASNSATSSSLASSS 199

Query: 340 TGETVSLLH*ATMAGLPTGTAKTGPVQESAGNS 438
              T S    AT + L +  A       S  +S
Sbjct: 200 LNSTTSAT--ATSSSLSSTAASNSATSSSLASS 230


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 33  CLFAASLYADEGTAFNEILAEHLYNDVIIADYDSAVERSK 152
           C  A   YAD      +  +E L +D+ I D+D+  E  K
Sbjct: 533 CTIAGVAYADVIPEDRQFTSEDLDSDMYIYDFDTLKENLK 572


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 224 ELHGVRLPALDARLRGHRPGLFPG*VH 304
           ++H      L+ARL GH+ G++   +H
Sbjct: 374 QIHNAITGVLEARLEGHKEGVWAVKIH 400


>SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 327 VKLMYRRDGLAFTLSDNGGVAYGDSKDR 410
           ++L+Y    +AF +   GG+A  D  DR
Sbjct: 289 LRLLYECFPMAFLVEQAGGIAVNDKGDR 316


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 420 RVSWKFIPLWENNKVYFKI 476
           R SW+  PLW   K+Y K+
Sbjct: 308 RKSWETYPLWVQVKLYEKV 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,873,039
Number of Sequences: 5004
Number of extensions: 34466
Number of successful extensions: 91
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)