Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329B09f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    30   0.87 
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    30   0.87 
Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf (pumilio/...    28   4.7  
U41991-8|AAA83348.2|  500|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U42838-2|AAB52493.1|  417|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AC024838-4|AAF60819.1|   99|Caenorhabditis elegans Hypothetical ...    27   8.1  

>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
 Frame = +3

Query: 3    PKMKSAVVVLCLFAASLYADEGT-AFNEILAEHLY--NDVIIADYDSAVERSKLIYTDN- 170
            P +K+ VV LC+ A +LY    T    E + E LY  + V  A    + +R +++  +  
Sbjct: 922  PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981

Query: 171  KGELITNVVNNLIRNNKMNCMEYAY 245
            + E   N++N  +      C+E AY
Sbjct: 982  EPETYHNILN--VMPEGQACLEKAY 1004


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
 Frame = +3

Query: 3    PKMKSAVVVLCLFAASLYADEGT-AFNEILAEHLY--NDVIIADYDSAVERSKLIYTDN- 170
            P +K+ VV LC+ A +LY    T    E + E LY  + V  A    + +R +++  +  
Sbjct: 922  PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981

Query: 171  KGELITNVVNNLIRNNKMNCMEYAY 245
            + E   N++N  +      C+E AY
Sbjct: 982  EPETYHNILN--VMPEGQACLEKAY 1004


>Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical
           protein F18A11.1 protein.
          Length = 485

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 180 LITNVVNNLIRNNKMNCMEYAYQLWMQGSEDIVRDCF 290
           L+  V++ L  N K+ C ++  QL       IVR+C+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCY 293


>AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf
           (pumilio/fbf) domain-containingprotein 7 protein.
          Length = 485

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 180 LITNVVNNLIRNNKMNCMEYAYQLWMQGSEDIVRDCF 290
           L+  V++ L  N K+ C ++  QL       IVR+C+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCY 293


>U41991-8|AAA83348.2|  500|Caenorhabditis elegans Hypothetical
           protein C42D4.2 protein.
          Length = 500

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 22/79 (27%), Positives = 33/79 (41%)
 Frame = +3

Query: 6   KMKSAVVVLCLFAASLYADEGTAFNEILAEHLYNDVIIADYDSAVERSKLIYTDNKGELI 185
           K K+  VV+ L   +L+ D    FN+    H Y    I     AV     I++    E  
Sbjct: 31  KSKNCAVVIYLHGGNLHYDSAVMFNDTFLLHTYASQEIVFVIPAVRLG--IFSHFVVEDQ 88

Query: 186 TNVVNNLIRNNKMNCMEYA 242
           +   NNL   + +  ME+A
Sbjct: 89  SIAPNNLALFDMLQAMEFA 107


>U42838-2|AAB52493.1|  417|Caenorhabditis elegans Hypothetical
           protein T08G2.3 protein.
          Length = 417

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 33  CLFAASLYADEGTAFNEILAEHLYNDVIIADYDSAVERSKLI 158
           CL  ++ YA E  AF  ++A H     ++AD    +E ++LI
Sbjct: 285 CLDESAKYALERKAFGTVIANHQAVQFMLADMAVNLELARLI 326


>AC024838-4|AAF60819.1|   99|Caenorhabditis elegans Hypothetical
           protein Y59E9AL.5 protein.
          Length = 99

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 273 CPRSLASRAGRRTPCSSSCC 214
           C  + ASR  R +PC S CC
Sbjct: 76  CSCTSASRCSRCSPCCSGCC 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,623,921
Number of Sequences: 27780
Number of extensions: 205212
Number of successful extensions: 596
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)