Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329B07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo...    28   0.73 
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    28   0.97 
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    27   1.3  
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    27   1.7  
SPAC3G6.03c |||Maf-like protein|Schizosaccharomyces pombe|chr 1|...    25   6.8  

>SPAC1F7.08 |fio1||iron transport multicopper oxidase
           Fio1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 622

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 308 ISGEQWYLPSAFSRYAQYEHPAFVTPTGAKPQSNTGRFN 424
           IS   WY  + F+     E   +  PTGA+P  +TG FN
Sbjct: 161 ISMTDWYY-TPFNILVPDEFKTWKNPTGAEPVPDTGLFN 198


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -3

Query: 423 LKRPVLDCGLAPV-GVTKAGCSYCA*RENALGRYHCSPDIVFMRTRFKKSWLKSMCGTAR 247
           L+RP ++  L  +    +    YC   +N +GRY+C+   ++     K S+    CG  R
Sbjct: 174 LERPAVENMLCMICSKVQPAAQYCKYCKNCMGRYYCNKCKLWDDDPNKSSYHCDDCGICR 233

Query: 246 STR 238
             R
Sbjct: 234 IGR 236


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 278 DFLNRVRMNTISGEQWYLPSAFSRYAQYEHP 370
           D L +V M+++  E   L S F +YA+YE P
Sbjct: 781 DLLRQVAMSSVKAETKEL-SKFEKYAKYEQP 810


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 47  EVDLMKENKETVAALKSRHKDAQIEVVETSLESPSHE 157
           EVD +  N    A  ++R  + QI + ETSLE   HE
Sbjct: 297 EVDGLNNNSNYSATPRTRVVNGQIVLDETSLEVDRHE 333


>SPAC3G6.03c |||Maf-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -2

Query: 307 RVHADP-IQEVLVEVDVRHGEEHQAVPGYPLQGEG 206
           +V  DP I +  +E  VR GE      GY +QG G
Sbjct: 163 QVKFDPSITDEFLEAYVRCGEGSDKAGGYAIQGHG 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.129    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,316,232
Number of Sequences: 5004
Number of extensions: 21519
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)