Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329B07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0312 + 2764744-2767390,2767632-2767990                           31   0.56 
10_08_0185 + 15578607-15578845,15580422-15580536,15580656-155807...    29   1.7  
10_07_0076 - 12635577-12635693,12635814-12635989,12636358-126364...    29   2.3  
03_01_0346 - 2721667-2721768,2721853-2721951,2722868-2722957,272...    29   2.3  
07_01_0601 + 4464745-4465010,4465274-4466582                           29   3.0  
06_03_0615 - 22761375-22761760,22762218-22765026                       28   4.0  
07_03_1143 - 24294516-24294528,24294656-24297926,24298011-24298056     28   5.2  
02_05_0596 + 30239186-30239567,30239642-30239742,30240680-302407...    27   6.9  
08_02_0365 - 16271106-16271327,16271504-16272241,16273034-16273120     27   9.1  

>08_01_0312 + 2764744-2767390,2767632-2767990
          Length = 1001

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -2

Query: 247 EHQAVPGYPLQGE--GERGPLRLLQQLHLAGVLVAGRLQARLDHL 119
           EH  + G    G   GE G LR L+ LHLAG  ++GRL   L  L
Sbjct: 180 EHLNLGGSFFNGSIPGEVGQLRRLRFLHLAGNALSGRLPRELGEL 224


>10_08_0185 +
           15578607-15578845,15580422-15580536,15580656-15580745,
           15581935-15582033,15582154-15582258
          Length = 215

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 248 LAVPHIDFNQDFLNRVRMNTISGEQWYLPSAFSRYAQYEHPAFVTP 385
           L VPHI+        + +  + G  + L S+   Y    H AF+TP
Sbjct: 112 LVVPHIELKHIVAAMISLKGLGGLLFILSSSLGAYLLLFHLAFITP 157


>10_07_0076 -
           12635577-12635693,12635814-12635989,12636358-12636493,
           12636714-12636929,12637021-12637134,12637456-12637559,
           12638417-12638687
          Length = 377

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +2

Query: 368 PAFVTPTGAKPQSNTGRFNVHLSLVSSFYRSDYDSAVAEWPGPGGGRTPA 517
           PA  TP G +     GR  VH++ +S+  R+ +    A   G GGG  PA
Sbjct: 25  PAAATPAGCRRCGPRGRAAVHVA-ISASGRASFSRGAA---GDGGGGRPA 70


>03_01_0346 -
           2721667-2721768,2721853-2721951,2722868-2722957,
           2723037-2723151,2724720-2724787
          Length = 157

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 248 LAVPHIDFNQDFLNRVRMNTISGEQWYLPSAFSRYAQYEHPAFVTP 385
           +AVPH++        + +  + G  + L S+F  Y    + AF+TP
Sbjct: 55  VAVPHVELKHIVAATIGLKGLGGLLFILSSSFGAYLLLIYLAFITP 100


>07_01_0601 + 4464745-4465010,4465274-4466582
          Length = 524

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 224 VPRDSLVLLAVPHIDFNQDFLNRVRMNTISGEQW 325
           VP+D      +PHI  N D    +R+  +SG++W
Sbjct: 353 VPKDDAAAGVLPHIQLNDDV--PLRIKDLSGKEW 384


>06_03_0615 - 22761375-22761760,22762218-22765026
          Length = 1064

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -2

Query: 229 GYPLQGE--GERGPLRLLQQLHLAGVLVAGRLQARLDH 122
           G  L GE  G  G L  L+QLHL+   +AGR+ A L +
Sbjct: 321 GNRLAGEVPGALGRLAALEQLHLSDNQLAGRIPAELSN 358


>07_03_1143 - 24294516-24294528,24294656-24297926,24298011-24298056
          Length = 1109

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -2

Query: 229 GYPLQGE--GERGPLRLLQQLHLAGVLVAGRLQARLDHLDLGVL 104
           G  L GE   + G +R L  LHL    + GRL   + HL L VL
Sbjct: 564 GNKLSGEIPSQIGAMRNLSLLHLDNNQLTGRLPPAISHLPLVVL 607


>02_05_0596 +
           30239186-30239567,30239642-30239742,30240680-30240777,
           30241448-30241656,30241754-30241806,30242069-30242137
          Length = 303

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 47  EVDLMKENKETVAALKSRHKDAQIEVVETSLESPSHE 157
           ++D  KE  ET  A  + HKD +++   ++  +P H+
Sbjct: 211 KMDAKKEVTETSQATTAEHKDMKVQSKTSTSTNPEHD 247


>08_02_0365 - 16271106-16271327,16271504-16272241,16273034-16273120
          Length = 348

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 368 PAFVTPTGAKPQSNTGRFN-VHLSLVSSFYRSDYDSAVAEWPGPGGGRTPA 517
           P  V PTG+K Q+N GR N VH+  + S  RS+   A  +  GP   R  A
Sbjct: 266 PRLVLPTGSKRQTN-GRMNRVHIGELPS--RSNPSRAGDDEVGPSKKRKRA 313


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.129    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,034,693
Number of Sequences: 37544
Number of extensions: 182433
Number of successful extensions: 661
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)