Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329B07f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC023531-1|AAH23531.1| 775|Homo sapiens chondroitin polymerizin... 60 5e-09
BC021223-1|AAH21223.2| 775|Homo sapiens chondroitin polymerizin... 60 5e-09
BC008878-1|AAH08878.2| 368|Homo sapiens CHPF protein protein. 60 5e-09
AK026331-1|BAB15449.1| 315|Homo sapiens protein ( Homo sapiens ... 60 5e-09
AB095813-1|BAC78393.1| 775|Homo sapiens chondroitin polymerizin... 60 5e-09
AB086063-1|BAC81536.1| 775|Homo sapiens chondroitin sulfate syn... 60 5e-09
AY358403-1|AAQ88769.1| 775|Homo sapiens RASL651 protein. 58 1e-08
AJ578034-1|CAE17326.1| 882|Homo sapiens chodroitin synthase 2 p... 41 0.002
AJ504664-1|CAD43233.1| 573|Homo sapiens chondroitin synthase 2 ... 41 0.002
AB175496-1|BAF47165.1| 882|Homo sapiens chondroitin synthase-2 ... 41 0.002
AB086062-1|BAC98832.1| 882|Homo sapiens chondroitin sulfate syn... 41 0.002
AY358407-1|AAQ88773.1| 772|Homo sapiens RLSS299 protein. 37 0.049
AB037823-1|BAA92640.1| 788|Homo sapiens KIAA1402 protein protein. 37 0.049
BC046247-1|AAH46247.1| 802|Homo sapiens carbohydrate (chondroit... 36 0.065
AY358529-1|AAQ88893.1| 802|Homo sapiens CHSY1 protein. 36 0.065
AB071402-1|BAB64936.1| 802|Homo sapiens chondroitin synthase pr... 36 0.065
AB023207-1|BAA76834.2| 883|Homo sapiens KIAA0990 protein protein. 36 0.065
AY358441-1|AAQ88806.1| 532|Homo sapiens MMVR656 protein. 31 1.9
AK002126-1|BAA92093.1| 275|Homo sapiens protein ( Homo sapiens ... 31 1.9
AB081516-1|BAC16217.1| 532|Homo sapiens beta-1,4-N-acetylgalact... 31 1.9
AB071403-1|BAB85992.1| 532|Homo sapiens chondroitin beta1,4 N-a... 31 1.9
BC064509-1|AAH64509.1| 666|Homo sapiens CSGlcA-T protein protein. 31 2.4
BC104936-1|AAI04937.1| 242|Homo sapiens chromosome 15 open read... 30 5.7
BC104934-1|AAI04935.1| 242|Homo sapiens chromosome 15 open read... 30 5.7
BC012456-1|AAH12456.1| 234|Homo sapiens C15orf24 protein protein. 30 5.7
AY358445-1|AAQ88810.1| 242|Homo sapiens AAAL905 protein. 30 5.7
AJ250344-1|CAB96539.1| 242|Homo sapiens hypothetical protein pr... 30 5.7
AJ245874-1|CAC01611.1| 242|Homo sapiens putative ATG/GTP bindin... 30 5.7
AF242729-1|AAG44477.1| 242|Homo sapiens HT022 protein. 30 5.7
AY971082-1|AAY18503.1| 161|Homo sapiens immunoglobulin alpha he... 29 7.5
BC130002-1|AAI30003.1| 267|Homo sapiens LOC390748 protein protein. 29 9.9
>BC023531-1|AAH23531.1| 775|Homo sapiens chondroitin polymerizing
factor protein.
Length = 775
Score = 60.1 bits (139), Expect = 5e-09
Identities = 36/86 (41%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Frame = +2
Query: 227 PRDSLVLLAVPHIDFNQDFLNRVRMNTISGEQWYLPSAFSRYAQYEHPAFVTPTGAKPQS 406
P D+L LLA P DFLNR RM+ ISG Q + P F + HPA P G P
Sbjct: 606 PLDTLFLLAGPDTVLTPDFLNRCRMHAISGWQAFFPMHFQAF----HPAVAPPQGPGPPE 661
Query: 407 ---NTGRFNVHLSLVSSFYRSDYDSA 475
+TGRF+ + + FY SDY +A
Sbjct: 662 LGRDTGRFDRQAASEACFYNSDYVAA 687
>BC021223-1|AAH21223.2| 775|Homo sapiens chondroitin polymerizing
factor protein.
Length = 775
Score = 60.1 bits (139), Expect = 5e-09
Identities = 36/86 (41%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Frame = +2
Query: 227 PRDSLVLLAVPHIDFNQDFLNRVRMNTISGEQWYLPSAFSRYAQYEHPAFVTPTGAKPQS 406
P D+L LLA P DFLNR RM+ ISG Q + P F + HPA P G P
Sbjct: 606 PLDTLFLLAGPDTVLTPDFLNRCRMHAISGWQAFFPMHFQAF----HPAVAPPQGPGPPE 661
Query: 407 ---NTGRFNVHLSLVSSFYRSDYDSA 475
+TGRF+ + + FY SDY +A
Sbjct: 662 LGRDTGRFDRQAASEACFYNSDYVAA 687
>BC008878-1|AAH08878.2| 368|Homo sapiens CHPF protein protein.
Length = 368
Score = 60.1 bits (139), Expect = 5e-09
Identities = 36/86 (41%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Frame = +2
Query: 227 PRDSLVLLAVPHIDFNQDFLNRVRMNTISGEQWYLPSAFSRYAQYEHPAFVTPTGAKPQS 406
P D+L LLA P DFLNR RM+ ISG Q + P F + HPA P G P
Sbjct: 199 PLDTLFLLAGPDTVLTPDFLNRCRMHAISGWQAFFPMHFQAF----HPAVAPPQGPGPPE 254
Query: 407 ---NTGRFNVHLSLVSSFYRSDYDSA 475
+TGRF+ + + FY SDY +A
Sbjct: 255 LGRDTGRFDRQAASEACFYNSDYVAA 280
>AK026331-1|BAB15449.1| 315|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22678 fis, clone HSI10665. ).
Length = 315
Score = 60.1 bits (139), Expect = 5e-09
Identities = 36/86 (41%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Frame = +2
Query: 227 PRDSLVLLAVPHIDFNQDFLNRVRMNTISGEQWYLPSAFSRYAQYEHPAFVTPTGAKPQS 406
P D+L LLA P DFLNR RM+ ISG Q + P F + HPA P G P
Sbjct: 146 PLDTLFLLAGPDTVLTPDFLNRCRMHAISGWQAFFPMHFQAF----HPAVAPPQGPGPPE 201
Query: 407 ---NTGRFNVHLSLVSSFYRSDYDSA 475
+TGRF+ + + FY SDY +A
Sbjct: 202 LGRDTGRFDRQAASEACFYNSDYVAA 227
>AB095813-1|BAC78393.1| 775|Homo sapiens chondroitin polymerizing
factor protein.
Length = 775
Score = 60.1 bits (139), Expect = 5e-09
Identities = 36/86 (41%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Frame = +2
Query: 227 PRDSLVLLAVPHIDFNQDFLNRVRMNTISGEQWYLPSAFSRYAQYEHPAFVTPTGAKPQS 406
P D+L LLA P DFLNR RM+ ISG Q + P F + HPA P G P
Sbjct: 606 PLDTLFLLAGPDTVLTPDFLNRCRMHAISGWQAFFPMHFQAF----HPAVAPPQGPGPPE 661
Query: 407 ---NTGRFNVHLSLVSSFYRSDYDSA 475
+TGRF+ + + FY SDY +A
Sbjct: 662 LGRDTGRFDRQAASEACFYNSDYVAA 687
>AB086063-1|BAC81536.1| 775|Homo sapiens chondroitin sulfate
synthase protein.
Length = 775
Score = 60.1 bits (139), Expect = 5e-09
Identities = 36/86 (41%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Frame = +2
Query: 227 PRDSLVLLAVPHIDFNQDFLNRVRMNTISGEQWYLPSAFSRYAQYEHPAFVTPTGAKPQS 406
P D+L LLA P DFLNR RM+ ISG Q + P F + HPA P G P
Sbjct: 606 PLDTLFLLAGPDTVLTPDFLNRCRMHAISGWQAFFPMHFQAF----HPAVAPPQGPGPPE 661
Query: 407 ---NTGRFNVHLSLVSSFYRSDYDSA 475
+TGRF+ + + FY SDY +A
Sbjct: 662 LGRDTGRFDRQAASEACFYNSDYVAA 687
>AY358403-1|AAQ88769.1| 775|Homo sapiens RASL651 protein.
Length = 775
Score = 58.4 bits (135), Expect = 1e-08
Identities = 35/86 (40%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Frame = +2
Query: 227 PRDSLVLLAVPHIDFNQDFLNRVRMNTISGEQWYLPSAFSRYAQYEHPAFVTPTGAKPQS 406
P D+L LLA P DFLNR RM+ ISG Q + P F + HP P G P
Sbjct: 606 PLDTLFLLAGPDTVLTPDFLNRCRMHAISGWQAFFPMHFQAF----HPGVAPPQGPGPPE 661
Query: 407 ---NTGRFNVHLSLVSSFYRSDYDSA 475
+TGRF+ + + FY SDY +A
Sbjct: 662 LGRDTGRFDRQAASEACFYNSDYVAA 687
>AJ578034-1|CAE17326.1| 882|Homo sapiens chodroitin synthase 2
protein.
Length = 882
Score = 41.1 bits (92), Expect = 0.002
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +2
Query: 233 DSLVLLAVPHIDFNQDFLNRVRMNTISGEQWYLPSAFSRY 352
D+L+L + F +DFL R R NTI G+Q Y P FS+Y
Sbjct: 711 DTLLLFCDVDLIFREDFLQRCRDNTIQGQQVYYPIIFSQY 750
>AJ504664-1|CAD43233.1| 573|Homo sapiens chondroitin synthase 2
protein.
Length = 573
Score = 41.1 bits (92), Expect = 0.002
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +2
Query: 233 DSLVLLAVPHIDFNQDFLNRVRMNTISGEQWYLPSAFSRY 352
D+L+L + F +DFL R R NTI G+Q Y P FS+Y
Sbjct: 402 DTLLLFCDVDLIFREDFLQRCRDNTIQGQQVYYPIIFSQY 441
>AB175496-1|BAF47165.1| 882|Homo sapiens chondroitin synthase-2
protein.
Length = 882
Score = 41.1 bits (92), Expect = 0.002
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +2
Query: 233 DSLVLLAVPHIDFNQDFLNRVRMNTISGEQWYLPSAFSRY 352
D+L+L + F +DFL R R NTI G+Q Y P FS+Y
Sbjct: 711 DTLLLFCDVDLIFREDFLQRCRDNTIQGQQVYYPIIFSQY 750
>AB086062-1|BAC98832.1| 882|Homo sapiens chondroitin sulfate
synthase protein.
Length = 882
Score = 41.1 bits (92), Expect = 0.002
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +2
Query: 233 DSLVLLAVPHIDFNQDFLNRVRMNTISGEQWYLPSAFSRY 352
D+L+L + F +DFL R R NTI G+Q Y P FS+Y
Sbjct: 711 DTLLLFCDVDLIFREDFLQRCRDNTIQGQQVYYPIIFSQY 750
>AY358407-1|AAQ88773.1| 772|Homo sapiens RLSS299 protein.
Length = 772
Score = 36.7 bits (81), Expect = 0.049
Identities = 48/184 (26%), Positives = 66/184 (35%), Gaps = 15/184 (8%)
Frame = +2
Query: 2 LLLVIVKQPSVGNTTEVDLMKENKETVAALKSRHKDAQIEVVETSLESPSHEHASEVXXX 181
L L++V P G D K A L+ R+ ++ + E+PS +V
Sbjct: 523 LTLLLVYGPREGGRGAPDPFLGVKAAAAELERRYPGTRLAWLAVRAEAPSQVRLMDVVSK 582
Query: 182 XXXXXXXXXXXXXXVPRDSLVLLAVPHIDFNQDFLNRVRMNTISGEQWYLPSAFSRY--- 352
P D+L L + LNR RMN ISG Q + P F +
Sbjct: 583 KH-------------PVDTLFFLTTVWTRPGPEVLNRCRMNAISGWQAFFPVHFQEFNPA 629
Query: 353 --AQYEHPA-------FVTPTGAKPQSNT---GRFNVHLSLVSSFYRSDYDSAVAEWPGP 496
Q P +P GA P GRF+ S FY +DY +A A G
Sbjct: 630 LSPQRSPPGPPGAGPDPPSPPGADPSRGAPIGGRFDRQASAEGCFYNADYLAARARLAGE 689
Query: 497 GGGR 508
G+
Sbjct: 690 LAGQ 693
>AB037823-1|BAA92640.1| 788|Homo sapiens KIAA1402 protein protein.
Length = 788
Score = 36.7 bits (81), Expect = 0.049
Identities = 48/184 (26%), Positives = 66/184 (35%), Gaps = 15/184 (8%)
Frame = +2
Query: 2 LLLVIVKQPSVGNTTEVDLMKENKETVAALKSRHKDAQIEVVETSLESPSHEHASEVXXX 181
L L++V P G D K A L+ R+ ++ + E+PS +V
Sbjct: 539 LTLLLVYGPREGGRGAPDPFLGVKAAAAELERRYPGTRLAWLAVRAEAPSQVRLMDVVSK 598
Query: 182 XXXXXXXXXXXXXXVPRDSLVLLAVPHIDFNQDFLNRVRMNTISGEQWYLPSAFSRY--- 352
P D+L L + LNR RMN ISG Q + P F +
Sbjct: 599 KH-------------PVDTLFFLTTVWTRPGPEVLNRCRMNAISGWQAFFPVHFQEFNPA 645
Query: 353 --AQYEHPA-------FVTPTGAKPQSNT---GRFNVHLSLVSSFYRSDYDSAVAEWPGP 496
Q P +P GA P GRF+ S FY +DY +A A G
Sbjct: 646 LSPQRSPPGPPGAGPDPPSPPGADPSRGAPIGGRFDRQASAEGCFYNADYLAARARLAGE 705
Query: 497 GGGR 508
G+
Sbjct: 706 LAGQ 709
>BC046247-1|AAH46247.1| 802|Homo sapiens carbohydrate (chondroitin)
synthase 1 protein.
Length = 802
Score = 36.3 bits (80), Expect = 0.065
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 233 DSLVLLAVPHIDFNQDFLNRVRMNTISGEQWYLPSAFSRY 352
+SL+ + F +FL R R NT+ G+Q Y P FS+Y
Sbjct: 624 ESLLFFCDVDLVFTTEFLQRCRANTVLGQQIYFPIIFSQY 663
>AY358529-1|AAQ88893.1| 802|Homo sapiens CHSY1 protein.
Length = 802
Score = 36.3 bits (80), Expect = 0.065
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 233 DSLVLLAVPHIDFNQDFLNRVRMNTISGEQWYLPSAFSRY 352
+SL+ + F +FL R R NT+ G+Q Y P FS+Y
Sbjct: 624 ESLLFFCDVDLVFTTEFLQRCRANTVLGQQIYFPIIFSQY 663
>AB071402-1|BAB64936.1| 802|Homo sapiens chondroitin synthase
protein.
Length = 802
Score = 36.3 bits (80), Expect = 0.065
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 233 DSLVLLAVPHIDFNQDFLNRVRMNTISGEQWYLPSAFSRY 352
+SL+ + F +FL R R NT+ G+Q Y P FS+Y
Sbjct: 624 ESLLFFCDVDLVFTTEFLQRCRANTVLGQQIYFPIIFSQY 663
>AB023207-1|BAA76834.2| 883|Homo sapiens KIAA0990 protein protein.
Length = 883
Score = 36.3 bits (80), Expect = 0.065
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 233 DSLVLLAVPHIDFNQDFLNRVRMNTISGEQWYLPSAFSRY 352
+SL+ + F +FL R R NT+ G+Q Y P FS+Y
Sbjct: 705 ESLLFFCDVDLVFTTEFLQRCRANTVLGQQIYFPIIFSQY 744
>AY358441-1|AAQ88806.1| 532|Homo sapiens MMVR656 protein.
Length = 532
Score = 31.5 bits (68), Expect = 1.9
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +2
Query: 230 RDSLVLLAVPHID--FNQDFLNRVRMNTISGEQWYLPSAFSRY 352
+ S VLL +D F +FLN R+NT G++ + P FS+Y
Sbjct: 348 KGSNVLLFFCDVDIYFTSEFLNTCRLNTQPGKKVFYPVLFSQY 390
>AK002126-1|BAA92093.1| 275|Homo sapiens protein ( Homo sapiens
cDNA FLJ11264 fis, clone PLACE1009111. ).
Length = 275
Score = 31.5 bits (68), Expect = 1.9
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +2
Query: 230 RDSLVLLAVPHID--FNQDFLNRVRMNTISGEQWYLPSAFSRY 352
+ S VLL +D F +FLN R+NT G++ + P FS+Y
Sbjct: 91 KGSNVLLFFCDVDIYFTSEFLNTCRLNTQPGKKVFYPVLFSQY 133
>AB081516-1|BAC16217.1| 532|Homo sapiens
beta-1,4-N-acetylgalactosaminyltransferase protein.
Length = 532
Score = 31.5 bits (68), Expect = 1.9
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +2
Query: 230 RDSLVLLAVPHID--FNQDFLNRVRMNTISGEQWYLPSAFSRY 352
+ S VLL +D F +FLN R+NT G++ + P FS+Y
Sbjct: 348 KGSNVLLFFCDVDIYFTSEFLNTCRLNTQPGKKVFYPVLFSQY 390
>AB071403-1|BAB85992.1| 532|Homo sapiens chondroitin beta1,4
N-acetylgalactosaminyltransferase protein.
Length = 532
Score = 31.5 bits (68), Expect = 1.9
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +2
Query: 230 RDSLVLLAVPHID--FNQDFLNRVRMNTISGEQWYLPSAFSRY 352
+ S VLL +D F +FLN R+NT G++ + P FS+Y
Sbjct: 348 KGSNVLLFFCDVDIYFTSEFLNTCRLNTQPGKKVFYPVLFSQY 390
>BC064509-1|AAH64509.1| 666|Homo sapiens CSGlcA-T protein protein.
Length = 666
Score = 31.1 bits (67), Expect = 2.4
Identities = 30/117 (25%), Positives = 43/117 (36%)
Frame = +2
Query: 2 LLLVIVKQPSVGNTTEVDLMKENKETVAALKSRHKDAQIEVVETSLESPSHEHASEVXXX 181
L L++V P G D K A L+ R+ ++ + E+PS +V
Sbjct: 523 LTLLLVYGPREGGRGAPDPFLGVKAAAAELERRYPGTRLAWLAVRAEAPSQVRLMDVVSK 582
Query: 182 XXXXXXXXXXXXXXVPRDSLVLLAVPHIDFNQDFLNRVRMNTISGEQWYLPSAFSRY 352
P D+L L + LNR RMN ISG Q + P F +
Sbjct: 583 KH-------------PVDTLFFLTTVWTRPGPEVLNRCRMNAISGWQAFFPVHFQEF 626
>BC104936-1|AAI04937.1| 242|Homo sapiens chromosome 15 open reading
frame 24 protein.
Length = 242
Score = 29.9 bits (64), Expect = 5.7
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 5 LLVIVKQPSVGNTTEVDLMKENKETVAALKSRHKDAQIEVVETSLES 145
LL+ V P V NT++ D+ +E ++++ L S H+ + T L S
Sbjct: 173 LLIFVLLPKVVNTSDPDMRREMEQSMNMLNSNHELPDVSEFMTRLFS 219
>BC104934-1|AAI04935.1| 242|Homo sapiens chromosome 15 open reading
frame 24 protein.
Length = 242
Score = 29.9 bits (64), Expect = 5.7
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 5 LLVIVKQPSVGNTTEVDLMKENKETVAALKSRHKDAQIEVVETSLES 145
LL+ V P V NT++ D+ +E ++++ L S H+ + T L S
Sbjct: 173 LLIFVLLPKVVNTSDPDMRREMEQSMNMLNSNHELPDVSEFMTRLFS 219
>BC012456-1|AAH12456.1| 234|Homo sapiens C15orf24 protein protein.
Length = 234
Score = 29.9 bits (64), Expect = 5.7
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 5 LLVIVKQPSVGNTTEVDLMKENKETVAALKSRHKDAQIEVVETSLES 145
LL+ V P V NT++ D+ +E ++++ L S H+ + T L S
Sbjct: 165 LLIFVLLPKVVNTSDPDMRREMEQSMNMLNSNHELPDVSEFMTRLFS 211
>AY358445-1|AAQ88810.1| 242|Homo sapiens AAAL905 protein.
Length = 242
Score = 29.9 bits (64), Expect = 5.7
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 5 LLVIVKQPSVGNTTEVDLMKENKETVAALKSRHKDAQIEVVETSLES 145
LL+ V P V NT++ D+ +E ++++ L S H+ + T L S
Sbjct: 173 LLIFVLLPKVVNTSDPDMRREMEQSMNMLNSNHELPDVSEFMTRLFS 219
>AJ250344-1|CAB96539.1| 242|Homo sapiens hypothetical protein
protein.
Length = 242
Score = 29.9 bits (64), Expect = 5.7
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 5 LLVIVKQPSVGNTTEVDLMKENKETVAALKSRHKDAQIEVVETSLES 145
LL+ V P V NT++ D+ +E ++++ L S H+ + T L S
Sbjct: 173 LLIFVLLPKVVNTSDPDMRREMEQSMNMLNSNHELPDVSEFMTRLFS 219
>AJ245874-1|CAC01611.1| 242|Homo sapiens putative ATG/GTP binding
protein protein.
Length = 242
Score = 29.9 bits (64), Expect = 5.7
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 5 LLVIVKQPSVGNTTEVDLMKENKETVAALKSRHKDAQIEVVETSLES 145
LL+ V P V NT++ D+ +E ++++ L S H+ + T L S
Sbjct: 173 LLIFVLLPKVVNTSDPDMRREMEQSMNMLNSNHELPDVSEFMTRLFS 219
>AF242729-1|AAG44477.1| 242|Homo sapiens HT022 protein.
Length = 242
Score = 29.9 bits (64), Expect = 5.7
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 5 LLVIVKQPSVGNTTEVDLMKENKETVAALKSRHKDAQIEVVETSLES 145
LL+ V P V NT++ D+ +E ++++ L S H+ + T L S
Sbjct: 173 LLIFVLLPKVVNTSDPDMRREMEQSMNMLNSNHELPDVSEFMTRLFS 219
>AY971082-1|AAY18503.1| 161|Homo sapiens immunoglobulin alpha heavy
chain variable region protein.
Length = 161
Score = 29.5 bits (63), Expect = 7.5
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +2
Query: 293 VRMNTISGEQWYLPSAFSRYAQYEHPAFVTPTGAKPQSNTGRFNVHLSLVSSFYRSDYDS 472
VR + G +W + F A Y HP+ + ++ G+F+++L VS + Y
Sbjct: 39 VRQSPGRGLEW-IGYIFRSGATYYHPSLQSRATISVDTSRGQFSLNLRSVSVADTAVYYC 97
Query: 473 AVAEWPGPGG 502
A A++ G GG
Sbjct: 98 ARADYRGWGG 107
>BC130002-1|AAI30003.1| 267|Homo sapiens LOC390748 protein protein.
Length = 267
Score = 29.1 bits (62), Expect = 9.9
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -3
Query: 516 AGVRPPPGPGHSATAES*SLL*KEETRLRCTLKRPVLDCGLAP 388
AG P PGPGH AE L + R R + P L G P
Sbjct: 171 AGPEPLPGPGHQGAAEKNQLPWDQLHRPRGPSRTPRLQGGTLP 213
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.316 0.129 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,893,188
Number of Sequences: 237096
Number of extensions: 886980
Number of successful extensions: 2825
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 2739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2816
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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