Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329B07f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00025-4|AAN65312.1| 606|Caenorhabditis elegans Hypothetical pr... 36 0.018
U00025-3|AAA50619.1| 804|Caenorhabditis elegans Hypothetical pr... 36 0.018
AB110824-1|BAD80739.1| 606|Caenorhabditis elegans chondroitin p... 36 0.018
AB110823-1|BAD80738.1| 804|Caenorhabditis elegans chondroitin p... 36 0.018
Z81131-6|CAE17977.2| 734|Caenorhabditis elegans Hypothetical pr... 30 0.87
Z81131-5|CAB03422.2| 608|Caenorhabditis elegans Hypothetical pr... 30 0.87
AY241925-2|AAO85273.1| 734|Caenorhabditis elegans chondroitin d... 30 0.87
AY241925-1|AAO85274.1| 736|Caenorhabditis elegans chondroitin d... 30 0.87
AB088398-1|BAC76781.1| 715|Caenorhabditis elegans chondroitin s... 30 0.87
AB088397-1|BAC76780.1| 726|Caenorhabditis elegans chondroitin s... 30 0.87
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z78539-4|CAB01731.1| 591|Caenorhabditis elegans Hypothetical pr... 29 2.0
U41021-7|AAL02487.1| 680|Caenorhabditis elegans Hypothetical pr... 29 2.0
U41021-6|AAL02488.1| 713|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z37983-4|CAA86057.1| 803|Caenorhabditis elegans Hypothetical pr... 28 3.5
AF125448-7|AAD12812.2| 302|Caenorhabditis elegans Cyclin c prot... 28 3.5
Z54306-5|CAD59141.1| 1012|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z54306-4|CAA91091.1| 1014|Caenorhabditis elegans Hypothetical pr... 28 4.7
AY314771-1|AAQ84878.1| 1012|Caenorhabditis elegans latrophilin-l... 28 4.7
AY314770-1|AAQ84877.1| 1014|Caenorhabditis elegans latrophilin-l... 28 4.7
Z83120-9|CAB05589.2| 773|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z81515-11|CAB04199.2| 773|Caenorhabditis elegans Hypothetical p... 27 8.1
AF011893-1|AAC27124.1| 773|Caenorhabditis elegans maternal-effe... 27 8.1
>U00025-4|AAN65312.1| 606|Caenorhabditis elegans Hypothetical
protein PAR2.4b protein.
Length = 606
Score = 35.9 bits (79), Expect = 0.018
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 233 DSLVLLAVPHIDFNQDFLNRVRMNTISGEQWYLPSAFSRY 352
+++ LL PH D ++F +R R+NTI Q + P F Y
Sbjct: 421 NTIYLLLSPHADVQKEFFDRARINTIKHYQVFFPVPFVEY 460
>U00025-3|AAA50619.1| 804|Caenorhabditis elegans Hypothetical
protein PAR2.4a protein.
Length = 804
Score = 35.9 bits (79), Expect = 0.018
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 233 DSLVLLAVPHIDFNQDFLNRVRMNTISGEQWYLPSAFSRY 352
+++ LL PH D ++F +R R+NTI Q + P F Y
Sbjct: 619 NTIYLLLSPHADVQKEFFDRARINTIKHYQVFFPVPFVEY 658
>AB110824-1|BAD80739.1| 606|Caenorhabditis elegans chondroitin
polymerizing factor-S protein.
Length = 606
Score = 35.9 bits (79), Expect = 0.018
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 233 DSLVLLAVPHIDFNQDFLNRVRMNTISGEQWYLPSAFSRY 352
+++ LL PH D ++F +R R+NTI Q + P F Y
Sbjct: 421 NTIYLLLSPHADVQKEFFDRARINTIKHYQVFFPVPFVEY 460
>AB110823-1|BAD80738.1| 804|Caenorhabditis elegans chondroitin
polymerizing factor protein.
Length = 804
Score = 35.9 bits (79), Expect = 0.018
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 233 DSLVLLAVPHIDFNQDFLNRVRMNTISGEQWYLPSAFSRY 352
+++ LL PH D ++F +R R+NTI Q + P F Y
Sbjct: 619 NTIYLLLSPHADVQKEFFDRARINTIKHYQVFFPVPFVEY 658
>Z81131-6|CAE17977.2| 734|Caenorhabditis elegans Hypothetical
protein T24D1.1b protein.
Length = 734
Score = 30.3 bits (65), Expect = 0.87
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 224 VPRDSLVLLAVPHIDFNQDFLNRVRMNTISGEQWYLPSAFSRYA 355
+P ++L+ + F D L R++ NTI Q Y P FS ++
Sbjct: 569 LPANALLFFTDVDMLFTCDALKRIKSNTILNAQIYFPIVFSEFS 612
>Z81131-5|CAB03422.2| 608|Caenorhabditis elegans Hypothetical
protein T24D1.1a protein.
Length = 608
Score = 30.3 bits (65), Expect = 0.87
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 224 VPRDSLVLLAVPHIDFNQDFLNRVRMNTISGEQWYLPSAFSRYA 355
+P ++L+ + F D L R++ NTI Q Y P FS ++
Sbjct: 443 LPANALLFFTDVDMLFTCDALKRIKSNTILNAQIYFPIVFSEFS 486
>AY241925-2|AAO85273.1| 734|Caenorhabditis elegans chondroitin
disaccharide polymerase protein.
Length = 734
Score = 30.3 bits (65), Expect = 0.87
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 224 VPRDSLVLLAVPHIDFNQDFLNRVRMNTISGEQWYLPSAFSRYA 355
+P ++L+ + F D L R++ NTI Q Y P FS ++
Sbjct: 569 LPANALLFFTDVDMLFTCDALKRIKSNTILNAQIYFPIVFSEFS 612
>AY241925-1|AAO85274.1| 736|Caenorhabditis elegans chondroitin
disaccharide polymerase protein.
Length = 736
Score = 30.3 bits (65), Expect = 0.87
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 224 VPRDSLVLLAVPHIDFNQDFLNRVRMNTISGEQWYLPSAFSRYA 355
+P ++L+ + F D L R++ NTI Q Y P FS ++
Sbjct: 571 LPANALLFFTDVDMLFTCDALKRIKSNTILNAQIYFPIVFSEFS 614
>AB088398-1|BAC76781.1| 715|Caenorhabditis elegans chondroitin
synthase-S protein.
Length = 715
Score = 30.3 bits (65), Expect = 0.87
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 224 VPRDSLVLLAVPHIDFNQDFLNRVRMNTISGEQWYLPSAFSRYA 355
+P ++L+ + F D L R++ NTI Q Y P FS ++
Sbjct: 550 LPANALLFFTDVDMLFTCDALKRIKSNTILNAQIYFPIVFSEFS 593
>AB088397-1|BAC76780.1| 726|Caenorhabditis elegans chondroitin
synthase protein.
Length = 726
Score = 30.3 bits (65), Expect = 0.87
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 224 VPRDSLVLLAVPHIDFNQDFLNRVRMNTISGEQWYLPSAFSRYA 355
+P ++L+ + F D L R++ NTI Q Y P FS ++
Sbjct: 561 LPANALLFFTDVDMLFTCDALKRIKSNTILNAQIYFPIVFSEFS 604
>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical
protein C06B8.7 protein.
Length = 3118
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 346 GERAGQVPLLAGYRVHADPIQEVL 275
G+ GQVPL GYR +PI+ VL
Sbjct: 23 GQAPGQVPLDPGYRQPLEPIKNVL 46
>Z78539-4|CAB01731.1| 591|Caenorhabditis elegans Hypothetical
protein C31E10.6 protein.
Length = 591
Score = 29.1 bits (62), Expect = 2.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 357 CA*RENALGRYHCSPDIVFMRTRFKKSW 274
CA RENA +YH D++F + ++ +W
Sbjct: 536 CASRENA--KYHALSDLLFQKRKYMSTW 561
>U41021-7|AAL02487.1| 680|Caenorhabditis elegans Hypothetical
protein F14D12.1a protein.
Length = 680
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +2
Query: 38 NTTEVDLMKENKETVAALKSRH--KDAQIEVVETSLESPSHEHASEV 172
N ++ L+ EN++ AAL + H +++Q E + +S ES S + S++
Sbjct: 521 NAVQISLLNENQKKAAALITNHNRENSQSESMASSSESLSSDARSKI 567
>U41021-6|AAL02488.1| 713|Caenorhabditis elegans Hypothetical
protein F14D12.1b protein.
Length = 713
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +2
Query: 38 NTTEVDLMKENKETVAALKSRH--KDAQIEVVETSLESPSHEHASEV 172
N ++ L+ EN++ AAL + H +++Q E + +S ES S + S++
Sbjct: 521 NAVQISLLNENQKKAAALITNHNRENSQSESMASSSESLSSDARSKI 567
>Z37983-4|CAA86057.1| 803|Caenorhabditis elegans Hypothetical
protein B0393.4 protein.
Length = 803
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 2 LLLVIVKQPSVGNTTEVDLMKENKETVAALKSR 100
+L IV+Q S GN + DL+++ + VA +K R
Sbjct: 484 MLNQIVQQSSAGNYEDADLLRKYRRDVAFVKER 516
>AF125448-7|AAD12812.2| 302|Caenorhabditis elegans Cyclin c protein
1 protein.
Length = 302
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/45 (31%), Positives = 29/45 (64%)
Frame = -3
Query: 135 LVSTTSIWASLCRDFSAATVSLFSFMRSTSVVLPTEGCFTITSRS 1
LV++T+++ + C+ T+S+ SF+++T++VLP T + S
Sbjct: 94 LVASTALFLA-CKVEEHTTLSVSSFLKNTAIVLPKRWGVTFETTS 137
>Z54306-5|CAD59141.1| 1012|Caenorhabditis elegans Hypothetical
protein B0457.1b protein.
Length = 1012
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 322 LLAGYRVHADPIQEVLVEVDVRHGEEHQAVPGY 224
++ G+RV A P + L + R+G +HQ G+
Sbjct: 901 MMPGHRVAAPPAYQRLAVAEGRYGSQHQLYQGW 933
>Z54306-4|CAA91091.1| 1014|Caenorhabditis elegans Hypothetical protein
B0457.1a protein.
Length = 1014
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 322 LLAGYRVHADPIQEVLVEVDVRHGEEHQAVPGY 224
++ G+RV A P + L + R+G +HQ G+
Sbjct: 903 MMPGHRVAAPPAYQRLAVAEGRYGSQHQLYQGW 935
>AY314771-1|AAQ84878.1| 1012|Caenorhabditis elegans latrophilin-like
protein LAT-1B protein.
Length = 1012
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 322 LLAGYRVHADPIQEVLVEVDVRHGEEHQAVPGY 224
++ G+RV A P + L + R+G +HQ G+
Sbjct: 901 MMPGHRVAAPPAYQRLAVAEGRYGSQHQLYQGW 933
>AY314770-1|AAQ84877.1| 1014|Caenorhabditis elegans latrophilin-like
protein LAT-1A protein.
Length = 1014
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 322 LLAGYRVHADPIQEVLVEVDVRHGEEHQAVPGY 224
++ G+RV A P + L + R+G +HQ G+
Sbjct: 903 MMPGHRVAAPPAYQRLAVAEGRYGSQHQLYQGW 935
>Z83120-9|CAB05589.2| 773|Caenorhabditis elegans Hypothetical
protein R06A4.7 protein.
Length = 773
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -3
Query: 450 KEETRLRCTLKRPVLDCGLAPVGVTKAGCSYCA*RENALGRYHCSPDI 307
+ ++R T P+ C A G A CA REN + Y C DI
Sbjct: 515 RNSEKVRMTAVTPITACRHA--GPCNATAENCACRENGVCSYMCKCDI 560
>Z81515-11|CAB04199.2| 773|Caenorhabditis elegans Hypothetical
protein R06A4.7 protein.
Length = 773
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -3
Query: 450 KEETRLRCTLKRPVLDCGLAPVGVTKAGCSYCA*RENALGRYHCSPDI 307
+ ++R T P+ C A G A CA REN + Y C DI
Sbjct: 515 RNSEKVRMTAVTPITACRHA--GPCNATAENCACRENGVCSYMCKCDI 560
>AF011893-1|AAC27124.1| 773|Caenorhabditis elegans maternal-effect
sterile 2 protein.
Length = 773
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -3
Query: 450 KEETRLRCTLKRPVLDCGLAPVGVTKAGCSYCA*RENALGRYHCSPDI 307
+ ++R T P+ C A G A CA REN + Y C DI
Sbjct: 515 RNSEKVRMTAVTPITACRHA--GPCNATAENCACRENGVCSYMCKCDI 560
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.129 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,580,995
Number of Sequences: 27780
Number of extensions: 129567
Number of successful extensions: 419
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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