Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329B06f
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060665-1|AAL28213.1|  300|Drosophila melanogaster GH09035p pro...   111   6e-25
AE014296-3106|AAF49189.1|  300|Drosophila melanogaster CG10424-P...   111   6e-25
AY051413-1|AAK92837.1|  679|Drosophila melanogaster GH09263p pro...    28   8.8  
AE014296-2470|AAF49668.2|  679|Drosophila melanogaster CG6778-PA...    28   8.8  
AE014296-2469|AAN11786.1|  765|Drosophila melanogaster CG6778-PB...    28   8.8  

>AY060665-1|AAL28213.1|  300|Drosophila melanogaster GH09035p
           protein.
          Length = 300

 Score =  111 bits (267), Expect = 6e-25
 Identities = 56/110 (50%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
 Frame = +3

Query: 192 LKKLTSNIVPTL-NGKSKGDLGRIGIIGGSVEYTGAPYFSAIAAFKAGADIVYVITTEDA 368
           L  L   +VP L N K KG  GRIG+IGGS+EYTGAPYF+AI++ + GAD+ +V    +A
Sbjct: 14  LLALFKTVVPKLVNNKHKGQYGRIGVIGGSLEYTGAPYFAAISSIRVGADLAHVFCHSNA 73

Query: 369 APVIKIYSPDLIVYPFLNKKYA-SKISSLLPKMDAIVIGPGLGREDETMK 515
           + +IK YSPDLIV+P L+   A  +I+  L ++  +VIGPGLGRE   +K
Sbjct: 74  SAIIKSYSPDLIVHPVLDCVDAVERIAPWLERLHVVVIGPGLGREPGILK 123


>AE014296-3106|AAF49189.1|  300|Drosophila melanogaster CG10424-PA
           protein.
          Length = 300

 Score =  111 bits (267), Expect = 6e-25
 Identities = 56/110 (50%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
 Frame = +3

Query: 192 LKKLTSNIVPTL-NGKSKGDLGRIGIIGGSVEYTGAPYFSAIAAFKAGADIVYVITTEDA 368
           L  L   +VP L N K KG  GRIG+IGGS+EYTGAPYF+AI++ + GAD+ +V    +A
Sbjct: 14  LLALFKTVVPKLVNNKHKGQYGRIGVIGGSLEYTGAPYFAAISSIRVGADLAHVFCHSNA 73

Query: 369 APVIKIYSPDLIVYPFLNKKYA-SKISSLLPKMDAIVIGPGLGREDETMK 515
           + +IK YSPDLIV+P L+   A  +I+  L ++  +VIGPGLGRE   +K
Sbjct: 74  SAIIKSYSPDLIVHPVLDCVDAVERIAPWLERLHVVVIGPGLGREPGILK 123


>AY051413-1|AAK92837.1|  679|Drosophila melanogaster GH09263p
           protein.
          Length = 679

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = +3

Query: 66  FISLIMTPSFNIILVILQVILFTFQITNGNECKMNFLTSKDILKKLTSNIVPTLN 230
           FI  ++ PSF I  ++  ++  +FQ  +G+E +  F T   ++  +  +I+P  N
Sbjct: 517 FIPSVVEPSFGIGRIMYSLLEHSFQCRDGDEQRCYF-TLPPLVAPIKCSILPLSN 570


>AE014296-2470|AAF49668.2|  679|Drosophila melanogaster CG6778-PA,
           isoform A protein.
          Length = 679

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = +3

Query: 66  FISLIMTPSFNIILVILQVILFTFQITNGNECKMNFLTSKDILKKLTSNIVPTLN 230
           FI  ++ PSF I  ++  ++  +FQ  +G+E +  F T   ++  +  +I+P  N
Sbjct: 517 FIPSVVEPSFGIGRIMYSLLEHSFQCRDGDEQRCYF-TLPPLVAPIKCSILPLSN 570


>AE014296-2469|AAN11786.1|  765|Drosophila melanogaster CG6778-PB,
           isoform B protein.
          Length = 765

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = +3

Query: 66  FISLIMTPSFNIILVILQVILFTFQITNGNECKMNFLTSKDILKKLTSNIVPTLN 230
           FI  ++ PSF I  ++  ++  +FQ  +G+E +  F T   ++  +  +I+P  N
Sbjct: 603 FIPSVVEPSFGIGRIMYSLLEHSFQCRDGDEQRCYF-TLPPLVAPIKCSILPLSN 656


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,946,501
Number of Sequences: 53049
Number of extensions: 353435
Number of successful extensions: 996
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)