Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329B06f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z14092-2|CAA78469.2|  307|Caenorhabditis elegans Hypothetical pr...   107   6e-24
Z93397-8|CAB07716.2|  545|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U41528-6|AAK39169.3|  424|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AL132904-27|CAC35854.1|  545|Caenorhabditis elegans Hypothetical...    27   6.2  
AL022716-4|CAA18773.1|  703|Caenorhabditis elegans Hypothetical ...    27   6.2  
AF077537-7|AAC26276.1|  203|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF000265-4|AAK68198.1|  457|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z14092-2|CAA78469.2|  307|Caenorhabditis elegans Hypothetical
           protein R107.2 protein.
          Length = 307

 Score =  107 bits (256), Expect = 6e-24
 Identities = 55/100 (55%), Positives = 71/100 (71%)
 Frame = +3

Query: 198 KLTSNIVPTLNGKSKGDLGRIGIIGGSVEYTGAPYFSAIAAFKAGADIVYVITTEDAAPV 377
           KL   + P L    KGD G++G+IGGS+EYTGAPYF+A +A + GAD++++    DAA V
Sbjct: 6   KLLPKLTPHLR---KGDCGKMGVIGGSLEYTGAPYFAASSASRLGADLIHIFCDPDAAQV 62

Query: 378 IKIYSPDLIVYPFLNKKYASKISSLLPKMDAIVIGPGLGR 497
           IK YSPDLIV+P +    A+ I   L +MDAIVIGPGLGR
Sbjct: 63  IKGYSPDLIVHPGMT---ANSIIPKLSRMDAIVIGPGLGR 99


>Z93397-8|CAB07716.2|  545|Caenorhabditis elegans Hypothetical
           protein ZC482.2 protein.
          Length = 545

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +3

Query: 105 LVILQVILFTFQITNGNECKMNFLTSKDILKKLTSNIV--PTLNGKSKGDLGRIGIIG 272
           L +LQ +  T  I N N   +NFL     +  L  N+   P +   S  +L  +G+ G
Sbjct: 404 LGVLQFLFGTLTIRNTNLTDLNFLDQMTYIGALNGNVTYFPVIQIYSNPNLRNVGLNG 461


>U41528-6|AAK39169.3|  424|Caenorhabditis elegans Hypothetical
           protein C15C7.6 protein.
          Length = 424

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -2

Query: 229 LSVGTILLVNFFKISLEVRKFILHSLPLVIWKVNKIT 119
           L++  ++ V    +S+ +RK    SLP+V++  NK+T
Sbjct: 385 LTIVFLVTVTIAGVSITLRKKNFQSLPVVLYSNNKVT 421


>AL132904-27|CAC35854.1|  545|Caenorhabditis elegans Hypothetical
           protein ZC482.2 protein.
          Length = 545

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +3

Query: 105 LVILQVILFTFQITNGNECKMNFLTSKDILKKLTSNIV--PTLNGKSKGDLGRIGIIG 272
           L +LQ +  T  I N N   +NFL     +  L  N+   P +   S  +L  +G+ G
Sbjct: 404 LGVLQFLFGTLTIRNTNLTDLNFLDQMTYIGALNGNVTYFPVIQIYSNPNLRNVGLNG 461


>AL022716-4|CAA18773.1|  703|Caenorhabditis elegans Hypothetical
           protein C24F3.4 protein.
          Length = 703

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 398 IRTVNFNNWRCVFSSNYVNYIRSCLESS 315
           + T   NNW   F  NY   +++C E++
Sbjct: 10  VATCTVNNWALDFKGNYERIVKTCEEAA 37


>AF077537-7|AAC26276.1|  203|Caenorhabditis elegans Hypothetical
           protein F16G10.8 protein.
          Length = 203

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = +3

Query: 108 VILQVI-LFTFQITNGNECKMNFLTSKDILKKLTSNIVPTLNGKSKGDLGRIGIIGGSVE 284
           VILQ+  L  FQ+ +   CK++  T  D+   L++N++ T +  ++G +  +    G V 
Sbjct: 68  VILQLTNLSKFQLVSEQLCKISEATCPDLASVLSANVIITTD--TEGCI-ELSCAYGFVP 124

Query: 285 YTGAPY 302
           + GA +
Sbjct: 125 FLGASF 130


>AF000265-4|AAK68198.1|  457|Caenorhabditis elegans Hypothetical
           protein C18E3.6 protein.
          Length = 457

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
 Frame = +3

Query: 225 LNGKSKGDLGRIGIIGGSVEYTGAPYFSAIAAFKAGADIVYVITTEDAAPVIKIYSPDLI 404
           L+ K  GDL R+G +  S+ +T   YF  IA  +  AD       ++ A ++   S +++
Sbjct: 56  LSAKIGGDLNRLGCMTRSLFFTHR-YFLWIACGRKKAD------NDEFATLVNDLSKEIV 108

Query: 405 VY-PFLNKKYASKISSLLPKMDAIVIGPGLGREDET 509
            +  F  K   S+  + +  ++A V G G   E +T
Sbjct: 109 AFSDFKEKNRKSEFYNHICGLEAAVGGFGWVAEPKT 144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,201,383
Number of Sequences: 27780
Number of extensions: 198581
Number of successful extensions: 615
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)