Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329B05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    29   0.56 
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    27   2.2  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    27   2.2  
SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5 |Schizos...    26   3.9  
SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr...    26   3.9  
SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces ...    25   5.2  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   9.0  

>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -1

Query: 191 GNPLYADYAGPVIMANIRRGSGLSPVSSPTS*GYAEIASQGSQLGRKKNRSGLNPADFC 15
           G  + A+YA    + N +R    SP+ S ++  Y E+ S+   +G       +NP+  C
Sbjct: 152 GKTVIAEYAIAQALKNRQRVIYTSPIKSLSNQKYRELLSEFGDVGLMTGDVSINPSASC 210


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 336 SSLRRIPHIRVS*QPPYR-SFFLIIMLHHPLYSVRCPMISPSDLCVELEHL 485
           S +R + H+++      R   F +I+L H L+  R PMIS   L    EHL
Sbjct: 436 SRIRTLHHVKLHPDNKSRLENFSVILLQHILHLTRQPMISMELLEHLTEHL 486


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -2

Query: 286 SASTLSAVNANRRIVGRPPTRRT 218
           S   LSA NA R+ VGRP T  T
Sbjct: 298 SIDGLSASNATRQYVGRPVTNET 320


>SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/71 (22%), Positives = 31/71 (43%)
 Frame = +3

Query: 285 LRFYYKQHNR*TAEMTSSSLRRIPHIRVS*QPPYRSFFLIIMLHHPLYSVRCPMISPSDL 464
           L FY    N     +T+  +  + H+    Q  Y + ++  ++ HPLY+   P      +
Sbjct: 80  LHFYETPTNLRLIFITNPKIDSLTHVL---QQIYTTLYVEFVVKHPLYTHVPPSAEEGGI 136

Query: 465 CVELEHLAIDR 497
             E+  + +DR
Sbjct: 137 NCEIFRITLDR 147


>SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -1

Query: 191 GNPLYADYAGPVIMANIRRGSGLSPVSSPTS*GYAEIASQGSQL 60
           G  + A   GPVI+  I+  +G S V   T   + EIA Q   L
Sbjct: 117 GGVIAAVCHGPVILPCIKDSTGFSIVKGKTVTAFNEIAEQQMNL 160


>SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +2

Query: 326 NDFVLFKTYSSYPSIMTTALQKLLLNNYAASSPVLCKVSNDI 451
           ND VL ++  + PS++T  +QKL+   +  +S    K S+DI
Sbjct: 352 ND-VLTESSKNTPSVVTFLIQKLIGQRWKKASLKQSKFSSDI 392


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 438  TLQSTGDDAA*LLRRSFCKAVVMILGYEEYVLK 340
            +L   G++A  +L +  CK +V+I  +EE VLK
Sbjct: 958  SLSQAGNEA--VLSKKACKPLVLIDPFEEKVLK 988


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,101,496
Number of Sequences: 5004
Number of extensions: 39365
Number of successful extensions: 100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)