Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329B05f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0011 + 162301-163218,163349-163987                               31   0.42 
12_01_0904 + 8791474-8792261,8792935-8793037,8794009-8794055,879...    29   2.3  
02_04_0458 - 23102262-23102377,23102505-23102661,23103094-231041...    29   2.3  
02_04_0456 - 23089507-23090607,23091561-23091635                       29   2.3  
04_04_0244 - 23869222-23870322,23871456-23871521                       27   6.9  

>06_01_0011 + 162301-163218,163349-163987
          Length = 518

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +3

Query: 351 IPHIRVS*QPPYRSFFLIIMLHHPLYSVRCPMISPSDLCVELEHLAIDRGFL 506
           I H+ +   PP+R+F  I+  H PL  +R   + PS  CV +    + R FL
Sbjct: 49  IGHLHLIRPPPHRAFDRILARHGPLVYLR---LGPSTHCVVIGSADVARDFL 97


>12_01_0904 +
           8791474-8792261,8792935-8793037,8794009-8794055,
           8795180-8795717
          Length = 491

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -1

Query: 212 PRPVKDGGNPLYADYAGPVIMANIRRG-SGLSPVSSPTS*GYAEIASQGSQL 60
           P+P  DGG+P  A   G  +        SG+SP ++P   GY   A  G +L
Sbjct: 109 PQPAHDGGSPAAA--VGQELSRRASASFSGVSPSAAPCYGGYLPTARSGRRL 158


>02_04_0458 -
           23102262-23102377,23102505-23102661,23103094-23104140,
           23104357-23104500,23105389-23105457
          Length = 510

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 186 STVCGLRRTGHYGEHSERFRFEPRELTY 103
           ST  GL++  H+ E+ +RF F    LTY
Sbjct: 196 STFTGLKKDLHFKENRQRFEFAESRLTY 223


>02_04_0456 - 23089507-23090607,23091561-23091635
          Length = 391

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 186 STVCGLRRTGHYGEHSERFRFEPRELTY 103
           ST  GL++  H+ E+ +RF F    LTY
Sbjct: 150 STFTGLKKDLHFKENRQRFEFAESRLTY 177


>04_04_0244 - 23869222-23870322,23871456-23871521
          Length = 388

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 186 STVCGLRRTGHYGEHSERFRFEPRELTY 103
           ST  GL++  H+ E+  RF F    LTY
Sbjct: 147 STFTGLKKPLHFKENRHRFGFAESRLTY 174


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,361,658
Number of Sequences: 37544
Number of extensions: 288715
Number of successful extensions: 664
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)