Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329B04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1196 - 34901320-34901342,34901937-34902041,34902314-349024...    29   3.0  
12_02_0674 - 21745321-21746223,21746229-21747608                       28   5.2  
11_03_0181 - 11301759-11301838,11302294-11303095                       27   9.1  

>02_05_1196 -
           34901320-34901342,34901937-34902041,34902314-34902482,
           34902645-34902716,34902788-34902871,34903219-34903317,
           34903416-34903515,34903704-34903878,34903985-34904198,
           34904727-34904803,34904879-34905048,34905593-34905629,
           34905988-34906123,34906658-34906915
          Length = 572

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 423 ALQCWLECYLYP*SCAYLVSRHEDCKARP 337
           A+ CWL+C L      Y  + H +CK+RP
Sbjct: 90  AVNCWLKCMLLD---PYNQTDHPECKSRP 115


>12_02_0674 - 21745321-21746223,21746229-21747608
          Length = 760

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -3

Query: 381 CAYLVSRHEDCKARPVRCAPNKGTPAPPQPHLTSPCL 271
           CA L+ R  DC+       P+   PAP +   T P L
Sbjct: 387 CAPLLKRPIDCRTNTCSALPSSSKPAPKKITPTPPTL 423


>11_03_0181 - 11301759-11301838,11302294-11303095
          Length = 293

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 301 RCWRAFVWRAPHRPSLTIFVSTHQI 375
           +CW + VW A  RP  T+ +ST Q+
Sbjct: 234 KCWTSPVWSATSRP--TVLLSTWQV 256


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,562,371
Number of Sequences: 37544
Number of extensions: 241829
Number of successful extensions: 738
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)