Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329B04f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein. 28 3.5
D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein. 28 3.5
D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein. 28 3.5
D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein. 28 3.5
AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical ... 28 3.5
AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical ... 28 3.5
Z50027-7|CAA90332.3| 460|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z50027-6|CAO82026.1| 564|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical p... 27 8.1
Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical pr... 27 8.1
L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient ... 27 8.1
L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient ... 27 8.1
AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologou... 27 8.1
>D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +3
Query: 390 DTNSILASIEERXRVLETVSAVQAKQTRRLDAIQDKLDRVETTL 521
D ++ + +EE+ + ++ A A RR+ ++++L+R E L
Sbjct: 63 DLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERL 106
>D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +3
Query: 390 DTNSILASIEERXRVLETVSAVQAKQTRRLDAIQDKLDRVETTL 521
D ++ + +EE+ + ++ A A RR+ ++++L+R E L
Sbjct: 63 DLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERL 106
>D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +3
Query: 390 DTNSILASIEERXRVLETVSAVQAKQTRRLDAIQDKLDRVETTL 521
D ++ + +EE+ + ++ A A RR+ ++++L+R E L
Sbjct: 63 DLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERL 106
>D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +3
Query: 390 DTNSILASIEERXRVLETVSAVQAKQTRRLDAIQDKLDRVETTL 521
D ++ + +EE+ + ++ A A RR+ ++++L+R E L
Sbjct: 63 DLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERL 106
>AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1d protein.
Length = 284
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +3
Query: 390 DTNSILASIEERXRVLETVSAVQAKQTRRLDAIQDKLDRVETTL 521
D ++ + +EE+ + ++ A A RR+ ++++L+R E L
Sbjct: 63 DLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERL 106
>AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1a protein.
Length = 284
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +3
Query: 390 DTNSILASIEERXRVLETVSAVQAKQTRRLDAIQDKLDRVETTL 521
D ++ + +EE+ + ++ A A RR+ ++++L+R E L
Sbjct: 63 DLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERL 106
>Z50027-7|CAA90332.3| 460|Caenorhabditis elegans Hypothetical
protein C39B10.2a protein.
Length = 460
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -2
Query: 292 TLNIALSIGIFQARRFSPFLLLFYWHCFFVISPVLFNFATVSEHVRR 152
TL L G+ Q ++ + L+Y C F + L FAT++ ++R+
Sbjct: 286 TLGNGLRFGLPQVS-YAKAIDLWYGACMFFVFCALLEFATINSYMRK 331
>Z50027-6|CAO82026.1| 564|Caenorhabditis elegans Hypothetical
protein C39B10.2b protein.
Length = 564
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -2
Query: 292 TLNIALSIGIFQARRFSPFLLLFYWHCFFVISPVLFNFATVSEHVRR 152
TL L G+ Q ++ + L+Y C F + L FAT++ ++R+
Sbjct: 286 TLGNGLRFGLPQVS-YAKAIDLWYGACMFFVFCALLEFATINSYMRK 331
>Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical
protein C53B4.4e protein.
Length = 1544
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = -3
Query: 315 GTPAPPQPHLTSPCL*GYSRHVDLALSCYCFIGTVFLLFHRYYLTSR--RFLS 163
G P HL S + +R + L L + F+GT F F R T + FLS
Sbjct: 97 GIPQKHVTHLRSQFILAETRIIPLCLGAFSFLGTFFSNFGRRNKTRKDLHFLS 149
>Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical
protein C53B4.4b protein.
Length = 1586
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = -3
Query: 315 GTPAPPQPHLTSPCL*GYSRHVDLALSCYCFIGTVFLLFHRYYLTSR--RFLS 163
G P HL S + +R + L L + F+GT F F R T + FLS
Sbjct: 97 GIPQKHVTHLRSQFILAETRIIPLCLGAFSFLGTFFSNFGRRNKTRKDLHFLS 149
>Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical
protein C53B4.4a protein.
Length = 1584
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = -3
Query: 315 GTPAPPQPHLTSPCL*GYSRHVDLALSCYCFIGTVFLLFHRYYLTSR--RFLS 163
G P HL S + +R + L L + F+GT F F R T + FLS
Sbjct: 97 GIPQKHVTHLRSQFILAETRIIPLCLGAFSFLGTFFSNFGRRNKTRKDLHFLS 149
>L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform b
protein.
Length = 1047
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 244 SPFLLLFYWHCFFVISPVLFNFATVSEHVRRVGTRSRYTRAT 119
SPF+ FY+ F L +AT ++ G R TRA+
Sbjct: 406 SPFMKFFYYSVSFATFLGLLTWATFEDYRYEKGERGGMTRAS 447
>L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform a
protein.
Length = 1027
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 244 SPFLLLFYWHCFFVISPVLFNFATVSEHVRRVGTRSRYTRAT 119
SPF+ FY+ F L +AT ++ G R TRA+
Sbjct: 386 SPFMKFFYYSVSFATFLGLLTWATFEDYRYEKGERGGMTRAS 427
>AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologous
cation channel proteinprotein.
Length = 1027
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 244 SPFLLLFYWHCFFVISPVLFNFATVSEHVRRVGTRSRYTRAT 119
SPF+ FY+ F L +AT ++ G R TRA+
Sbjct: 386 SPFMKFFYYSVSFATFLGLLTWATFEDYRYEKGERGGMTRAS 427
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,542,370
Number of Sequences: 27780
Number of extensions: 195736
Number of successful extensions: 642
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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