Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329B04f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.3  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   5.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   7.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 330  CAPNKGTPAPPQ 295
            CAPN+  P PP+
Sbjct: 1695 CAPNRRCPPPPR 1706


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +3

Query: 159 TCSETVAKLNNTGEITKKQCQ*NNSRKG 242
           TCS  VAK  N   +T      NNS  G
Sbjct: 518 TCSLAVAKQQNQVPLTSSSNVNNNSGNG 545


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = -3

Query: 423 ALQCWLECYLYP*SCAYLVSRHEDCKARPVRCAPNKG 313
           A+ CW     Y      +V+RH++    P     N+G
Sbjct: 337 AVGCWNSLLPYSPENQAVVARHDEAMIFPADVKINRG 373


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 309 PAPPQPHLTSPCL 271
           P PP P +TS C+
Sbjct: 181 PEPPVPTVTSACV 193


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 210 FLLFHRYYLTSRRFLSTCVVWVHVR 136
           +LLF    +T   +++ CV+ VH R
Sbjct: 315 YLLFTMILVTLSIWITVCVLNVHFR 339


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 324 PNKGTPAPPQPHLTS 280
           P+ G P PP P++++
Sbjct: 411 PSAGAPMPPIPNMSN 425


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,448
Number of Sequences: 438
Number of extensions: 2621
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)