Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329B03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    30   0.24 
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    25   5.2  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    25   6.8  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    25   6.8  
SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha...    25   9.0  
SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr 1...    25   9.0  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
 Frame = -2

Query: 376 GFRPERSCSDQINLLRMILEQCQEMQCEVFTLFIDFEKAFDNVSWSSI*TVLKKKGVPDK 197
           GFRP RSC   +  +    + C       + +  D +  FD++    +  +L  K    +
Sbjct: 342 GFRPGRSCHSALRSIFTNFKGC------TWWIEGDIKACFDSIPHDKLIALLSSKIKDQR 395

Query: 196 LINVIKALYYGSSCRVLHRGKLTDNIVV--TAGVKQGCLLSPLL 71
            I +I+        + L+ G LT+N       G  QG ++SP+L
Sbjct: 396 FIQLIR--------KALNAGYLTENRYKYDIVGTPQGSIVSPIL 431


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 341 KPFTNDPRTMSGDAV*SFHIVY 276
           +PF NDP     +AV +++I+Y
Sbjct: 575 RPFENDPPRCIAEAVTAYYIIY 596


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 104 ACGDHDIIRKFSPVEYSTRRSIVKGFYDIYE 196
           A G+    R F+PV +S  R     FYDI E
Sbjct: 102 ASGNRSYSRPFAPVVHSRIRFRKSPFYDILE 132


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 365 WSKPCLLFSELTVNPLWPSSSAKFSRELLNKLVAGLYP 478
           WS  C+L+  LT +  + SSS     EL++K   G YP
Sbjct: 359 WSLGCVLYVMLTASIPFASSSQAKCIELISK---GAYP 393


>SPCC18.15 |||WD repeat protein, human WRDR85
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 413 WPSSSAKFSRELLNKLVAGLYPSSWHTRKGHPFLVV 520
           WP+   K+S+   + LV G Y     T+  H  LV+
Sbjct: 16  WPADVCKYSQVFEDVLVVGTYMLDESTKLRHGKLVL 51


>SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 145

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -1

Query: 233 LNCFEEKRRARQAHKCHKSPLLWIVV*STPQGKTYG*YRGHRR 105
           LN   E   A  +H CH    +++   S      Y  ++GH+R
Sbjct: 88  LNSDHEPHTASLSHICHSDSSVFLRAFSETNKSRYRRWQGHKR 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,288,588
Number of Sequences: 5004
Number of extensions: 46151
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)