Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329B03f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 78 5e-15
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 71 7e-13
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 64 5e-11
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 55 3e-08
04_04_1335 - 32730516-32730570,32730655-32731154,32731235-327314... 31 0.42
04_04_1334 - 32723950-32724121,32724527-32724558,32724665-327247... 31 0.42
02_01_0590 + 4376785-4377009,4378153-4378407,4378514-4378641,437... 31 0.56
02_01_0473 - 3403547-3404241,3404455-3404983,3405299-3405477,340... 31 0.56
01_06_0019 + 25620966-25621580 29 2.3
12_01_0024 + 178539-179418,179593-179938,180127-180244 29 3.0
04_03_0357 + 14852584-14853058,14853116-14855754 29 3.0
02_02_0604 - 12064451-12065683,12065729-12065827,12065858-120659... 28 4.0
01_05_0535 - 23001864-23005052 27 6.9
02_04_0243 + 21244743-21245837,21245921-21246148,21246240-212464... 27 9.1
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 77.8 bits (183), Expect = 5e-15
Identities = 42/115 (36%), Positives = 61/115 (53%)
Frame = -2
Query: 385 EQAGFRPERSCSDQINLLRMILEQCQEMQCEVFTLFIDFEKAFDNVSWSSI*TVLKKKGV 206
+Q GF R S+ + +++ C +C+ + +DF KAFD+V+W S+ +L KG
Sbjct: 5 DQTGFLKGRCISENLIYATELIQACHARKCQTLIIKLDFAKAFDSVNWQSLFQILSVKGF 64
Query: 205 PDKLINVIKALYYGSSCRVLHRGKLTDNIVVTAGVKQGCLLSPLLFIMVLDDVMR 41
PD I+ IK L S VL G I G++QG LSP LFI+V D + R
Sbjct: 65 PDNWISWIKNLLQTSKSAVLLHGIPGKWITCKKGLRQGDPLSPYLFILVADVLQR 119
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 70.5 bits (165), Expect = 7e-13
Identities = 40/115 (34%), Positives = 59/115 (51%)
Frame = -2
Query: 385 EQAGFRPERSCSDQINLLRMILEQCQEMQCEVFTLFIDFEKAFDNVSWSSI*TVLKKKGV 206
+Q GF R S+ + +++ C +C+ + +DF KAFD+V WSS+ +L +G
Sbjct: 1020 DQTGFLKGRCISENLIYATELIQACYRRKCQTIIVKLDFTKAFDSVIWSSLFKILAVRGF 1079
Query: 205 PDKLINVIKALYYGSSCRVLHRGKLTDNIVVTAGVKQGCLLSPLLFIMVLDDVMR 41
P+ I+ IK L S VL G I G+ QG LS LFI+V D + R
Sbjct: 1080 PENWISWIKGLLSSSKSAVLLNGVPGRWICCKKGLLQGDPLSSYLFILVADVLQR 1134
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 64.5 bits (150), Expect = 5e-11
Identities = 36/104 (34%), Positives = 59/104 (56%)
Frame = -2
Query: 322 LEQCQEMQCEVFTLFIDFEKAFDNVSWSSI*TVLKKKGVPDKLINVIKALYYGSSCRVLH 143
+ QCQ+ + E+ L +DFEKAFD + S+I +V++ G P K I ++ ++ +S VL
Sbjct: 441 IHQCQQSKREIVLLKLDFEKAFDTIEHSAILSVMQHMGFPLKWIEWVQMVFSTASSAVLL 500
Query: 142 RGKLTDNIVVTAGVKQGCLLSPLLFIMVLDDVMRRVTCKCRQGL 11
G ++ GV+QG LS LLF++ + + R + QGL
Sbjct: 501 NGVPGNSFKCRRGVRQGVPLSLLLFVLGAELLQRIINKAFHQGL 544
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -1
Query: 518 LPKKGGLSSCANWRGISLLPICSKVLAKILLMRMAKV 408
+PKK L + ++R ISL+ I K++ K+L R+ V
Sbjct: 376 VPKKTSLETVNDFRPISLMGISLKIVTKLLAGRLQGV 412
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 55.2 bits (127), Expect = 3e-08
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 2/127 (1%)
Frame = -2
Query: 388 EEQAGFRPERSCSDQINLLRMILEQCQEMQCE--VFTLFIDFEKAFDNVSWSSI*TVLKK 215
E Q+ F P R +D + L ++ + F L ID KA+D + WS + L +
Sbjct: 218 EFQSAFVPGRLITDSSLVAYECLNTIKKQSNKKPFFALKIDMMKAYDRIEWSYLHGCLMR 277
Query: 214 KGVPDKLINVIKALYYGSSCRVLHRGKLTDNIVVTAGVKQGCLLSPLLFIMVLDDVMRRV 35
G IN + + + G+LTD +V + G++QG +SP LF++ + + +
Sbjct: 278 LGFEQDWINTVMRCVTSTRYAIRINGELTDTVVPSRGIRQGDPISPYLFLLCTEGLSCML 337
Query: 34 TCKCRQG 14
K +QG
Sbjct: 338 QKKEQQG 344
>04_04_1335 -
32730516-32730570,32730655-32731154,32731235-32731416,
32732673-32732779,32733364-32733395,32733499-32733542,
32733816-32733977,32734356-32734755
Length = 493
Score = 31.5 bits (68), Expect = 0.42
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -2
Query: 157 CRVLHRGKLTDNIVVTAGVKQGCLLSPLLFIMVL 56
CR H G L+ ++V AG Q C +P+LF+ ++
Sbjct: 124 CRSFHIGILSGALLVIAGFSQLCSTTPILFVDIV 157
>04_04_1334 -
32723950-32724121,32724527-32724558,32724665-32724708,
32724962-32725123,32725984-32726422
Length = 282
Score = 31.5 bits (68), Expect = 0.42
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -2
Query: 157 CRVLHRGKLTDNIVVTAGVKQGCLLSPLLFIMVL 56
CR H G L+ ++V AG Q C ++P LF+ ++
Sbjct: 137 CRSFHIGILSGALLVIAGFSQLCNMTPFLFVDIV 170
>02_01_0590 +
4376785-4377009,4378153-4378407,4378514-4378641,
4378738-4378779,4378875-4378956,4379035-4379103,
4379180-4379350,4379430-4379495,4379777-4379845,
4379928-4380056,4380845-4380881,4380906-4380997,
4381541-4381602,4381855-4381918
Length = 496
Score = 31.1 bits (67), Expect = 0.56
Identities = 25/87 (28%), Positives = 41/87 (47%)
Frame = +2
Query: 32 GDSAHHIIKHHYKEQGRQQATLLDACGDHDIIRKFSPVEYSTRRSIVKGFYDIYELVGHA 211
GD I ++ K Q ++ LD C + K S EY R + + +DI EL A
Sbjct: 317 GDRMQSIQENEAKLQAEKKP--LDKCKE-----KASQDEYM--RGVSEWNFDIEELKAQA 367
Query: 212 FFLQNSSNAGPTDIVKSLFEVDKQCEN 292
+ ++ G + ++ LFE+D CE+
Sbjct: 368 ALYPDENDGGEDEYLRFLFELDTICES 394
>02_01_0473 -
3403547-3404241,3404455-3404983,3405299-3405477,
3405868-3405952,3406136-3406482,3407061-3407159,
3408135-3408636
Length = 811
Score = 31.1 bits (67), Expect = 0.56
Identities = 26/102 (25%), Positives = 44/102 (43%)
Frame = -2
Query: 319 EQCQEMQCEVFTLFIDFEKAFDNVSWSSI*TVLKKKGVPDKLINVIKALYYGSSCRVLHR 140
++C+ L +D KA+D V W+ + VL++ G D + SC
Sbjct: 224 QKCKRENQNFCALKLDLSKAYDRVDWAFLDGVLQRMGFGDTWRK------WTMSC----- 272
Query: 139 GKLTDNIVVTAGVKQGCLLSPLLFIMVLDDVMRRVTCKCRQG 14
+I G++QG LSP LF+ + D + + K +G
Sbjct: 273 ----VDICPIRGLRQGDPLSPYLFLFIADGLSHILEKKSLEG 310
>01_06_0019 + 25620966-25621580
Length = 204
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 114 SPQASSKVACCLPCSL*WCLMM*CAESPVNADKDCL 7
S AS CC PC++ CL + ++P A + C+
Sbjct: 34 SAVASCVALCCCPCAVVGCLTLALVKAPYAAGRRCV 69
>12_01_0024 + 178539-179418,179593-179938,180127-180244
Length = 447
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -2
Query: 163 SSCRVLHRGKLTDNIVVTAGVKQGCLLSPLLFIMVLDDVMRRVTCKCRQGL 11
+S VL G ++ GV+QG LSPLLF++ + + R + QGL
Sbjct: 6 ASSAVLLNGVPGNSFKCRRGVRQGDPLSPLLFVLGGELLQRVINKAFHQGL 56
>04_03_0357 + 14852584-14853058,14853116-14855754
Length = 1037
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/66 (22%), Positives = 30/66 (45%)
Frame = -1
Query: 365 RTFMLGPNKPFTNDPRTMSGDAV*SFHIVYRLRKGF*QCQLVQHLNCFEEKRRARQAHKC 186
R F P PF+ND S A+ I +R + ++VQ + + +R++ +
Sbjct: 564 RIFFNVPGMPFSNDSNLKSQGAIYLKEITFRSKDPRHSSEVVQQIKTLRRQVASRESERA 623
Query: 185 HKSPLL 168
++ L+
Sbjct: 624 ERATLV 629
>02_02_0604 -
12064451-12065683,12065729-12065827,12065858-12065955,
12066782-12066924,12067233-12067729
Length = 689
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 181 KALYYGSSCRVLHRGKLTDNIVVTAGVKQGCLLSPLLFIM 62
K Y R+ G L+D G++QG LSPLLF++
Sbjct: 207 KLRYLLEETRIDINGTLSDPFKPMRGLRQGDPLSPLLFVL 246
>01_05_0535 - 23001864-23005052
Length = 1062
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = -2
Query: 256 DNVSWSSI*TVLKKKGVPDKLINVIKALYYGSSCRVLHRGKLTDNIVVTAGVKQGCLLSP 77
D ++W+++ +V K+G + +A+ Y S L + T ++TA C L
Sbjct: 237 DLITWNALMSVYAKRGDAICTFTLFRAMQYDDSGIELRPTEHTFGSLITATYLSSCSLGL 296
Query: 76 L--LFIMVL 56
L LF+ VL
Sbjct: 297 LDQLFVRVL 305
>02_04_0243 +
21244743-21245837,21245921-21246148,21246240-21246458,
21246557-21247000,21247440-21247547,21247790-21247909
Length = 737
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -2
Query: 505 VAFPRVPTGGV*ACYQFVQKFSRKFC**GWPKWVDSELREEQAGFRPERS 356
V P+V GGV Q FS + GWP W+ S E G+ P R+
Sbjct: 112 VDVPQVVPGGV------PQGFSGEHVIAGWPSWLTSVAGEVVQGWLPRRA 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,032,177
Number of Sequences: 37544
Number of extensions: 298976
Number of successful extensions: 825
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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