Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329B03f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 68 4e-12
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 68 4e-12
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 68 5e-12
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 52 2e-07
AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical ... 44 9e-05
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 40 0.001
AL033514-15|CAA22102.1| 272|Caenorhabditis elegans Hypothetical... 34 0.054
AC006673-6|AAF39926.2| 335|Caenorhabditis elegans Serpentine re... 30 1.2
AC006673-5|AAF39919.2| 335|Caenorhabditis elegans Serpentine re... 28 3.5
U21319-1|AAC46673.2| 258|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z70309-8|CAE17922.1| 196|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z50741-1|CAA90609.1| 395|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z70684-11|CAA94604.1| 1141|Caenorhabditis elegans Hypothetical p... 27 8.1
Z70682-10|CAA94588.1| 1141|Caenorhabditis elegans Hypothetical p... 27 8.1
AL132846-4|CAB60347.1| 328|Caenorhabditis elegans Hypothetical ... 27 8.1
AF040643-14|AAB94956.1| 299|Caenorhabditis elegans Hypothetical... 27 8.1
AC006816-6|ABA00154.1| 506|Caenorhabditis elegans Hypothetical ... 27 8.1
AB073210-1|BAB70473.1| 1141|Caenorhabditis elegans rac effector ... 27 8.1
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 68.1 bits (159), Expect = 4e-12
Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 2/120 (1%)
Frame = -2
Query: 385 EQAGFRPERSCSDQINLLRMILEQCQEMQCEVFTLFIDFEKAFDNVSWSSI*TVLKKKGV 206
EQAGFR S D I+ L+ +LE +E Q + +FIDF+KAFD+V +I L ++G
Sbjct: 655 EQAGFRRSFSTIDHIHSLQRLLEVGREYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQGA 714
Query: 205 PDKLINVIKALYYGSSCRV--LHRGKLTDNIVVTAGVKQGCLLSPLLFIMVLDDVMRRVT 32
I+++K Y + HR + VT GV+QG +SP LF L+ V R+++
Sbjct: 715 DGAYIDLLKECYKNCTTNFTPFHRPVA---VPVTKGVRQGDPISPNLFSACLEHVFRKLS 771
Score = 32.7 bits (71), Expect = 0.16
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -1
Query: 512 KKGGLSSCANWRGISLLPICSKVLAKILLMRMAK 411
KKG + N+R I LLP+ KV K LL RM +
Sbjct: 613 KKGDRENLENYRPICLLPVLYKVFTKCLLNRMRR 646
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 68.1 bits (159), Expect = 4e-12
Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 2/120 (1%)
Frame = -2
Query: 385 EQAGFRPERSCSDQINLLRMILEQCQEMQCEVFTLFIDFEKAFDNVSWSSI*TVLKKKGV 206
EQAGFR S D I+ L+ +LE +E Q + +FIDF+KAFD+V +I L ++G
Sbjct: 394 EQAGFRRSFSTIDHIHSLQRLLEVGREYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQGA 453
Query: 205 PDKLINVIKALYYGSSCRV--LHRGKLTDNIVVTAGVKQGCLLSPLLFIMVLDDVMRRVT 32
I+++K Y + HR + VT GV+QG +SP LF L+ V R+++
Sbjct: 454 DGAYIDLLKECYKNCTTNFTPFHRPVA---VPVTKGVRQGDPISPNLFSACLEHVFRKLS 510
Score = 32.7 bits (71), Expect = 0.16
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -1
Query: 512 KKGGLSSCANWRGISLLPICSKVLAKILLMRMAK 411
KKG + N+R I LLP+ KV K LL RM +
Sbjct: 352 KKGDRENLENYRPICLLPVLYKVFTKCLLNRMRR 385
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 67.7 bits (158), Expect = 5e-12
Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Frame = -2
Query: 385 EQAGFRPERSCSDQINLLRMILEQCQEMQCEVFTLFIDFEKAFDNVSWSSI*TVLKKKGV 206
EQAGFR S D I+ L+ +LE +E Q + +FIDF+KAFD V +I L ++G
Sbjct: 484 EQAGFRRSFSTIDHIHSLQRLLEVGREYQIPLTLVFIDFKKAFDTVEHQAIWKSLDEQGA 543
Query: 205 PDKLINVIKALYYGSSCRV--LHRGKLTDNIVVTAGVKQGCLLSPLLFIMVLDDVMRRVT 32
I+++K Y + HR + VT GV+QG +SP LF L+ V R+++
Sbjct: 544 DGAYIDLLKECYKNCTTNFTPFHRPVA---VPVTKGVRQGDPISPNLFSACLEHVFRKLS 600
Score = 32.7 bits (71), Expect = 0.16
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -1
Query: 512 KKGGLSSCANWRGISLLPICSKVLAKILLMRMAK 411
KKG + N+R I LLP+ KV K LL RM +
Sbjct: 442 KKGDRENLENYRPICLLPVLYKVFTKCLLNRMRR 475
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 52.4 bits (120), Expect = 2e-07
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = -2
Query: 283 LFIDFEKAFDNVSWSSI*TVLKKKGVPDKLINVIKALYYGSSCRVLHRGKLTD-NIVVTA 107
+FIDF+KAFD+V +I L ++G + I+++K Y +C L + VT
Sbjct: 40 VFIDFKKAFDSVEHQAIWKSLDEQGADEAYIDLLKECY--KNCTTNFTPFLRPITVPVTK 97
Query: 106 GVKQGCLLSPLLFIMVLDDVMRRVTC 29
GV+QG +SP LF L+ V R+++C
Sbjct: 98 GVRQGDPISPNLFSACLEHVFRKLSC 123
>AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical
protein F21E9.5 protein.
Length = 864
Score = 43.6 bits (98), Expect = 9e-05
Identities = 29/86 (33%), Positives = 45/86 (52%)
Frame = -2
Query: 271 FEKAFDNVSWSSI*TVLKKKGVPDKLINVIKALYYGSSCRVLHRGKLTDNIVVTAGVKQG 92
F+KAFD+V + L+++GV IN+++ Y S K + VT GV+QG
Sbjct: 467 FQKAFDSVEPEDVWDSLQQQGVQRGYINLLQECYTDCSTTFTPFHKNV-TVPVTRGVRQG 525
Query: 91 CLLSPLLFIMVLDDVMRRVTCKCRQG 14
+SP LF L+ V R++ K +G
Sbjct: 526 DPISPNLFSACLEHVFRQLNWKHFKG 551
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 39.9 bits (89), Expect = 0.001
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Frame = -2
Query: 295 EVFTLFIDFEKAFDNVSWSSI*TVLKKKGVPDKLINVIKALYYGSSCRVLHRGKLTDNIV 116
++ +++DF KAFD + + L L+ + S RV L+
Sbjct: 13 QIDIIYLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWVNEFLSNRSFRVRIGQTLSSRKF 72
Query: 115 VTAGVKQGCLLSPLLFIMVLDDVM----RRVTCK 26
T GV QG +LSPLLF + ++D+ +V CK
Sbjct: 73 ATCGVPQGAVLSPLLFGIYVNDISSILPEKVACK 106
>AL033514-15|CAA22102.1| 272|Caenorhabditis elegans Hypothetical
protein Y75B8A.14 protein.
Length = 272
Score = 34.3 bits (75), Expect = 0.054
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = -3
Query: 303 CSVKFSHCLSTSKRLLTMSVGPAFELF 223
CSV ++HCLST + L +++ PA E+F
Sbjct: 19 CSVMYNHCLSTGRTLRMVNLDPACEVF 45
>AC006673-6|AAF39926.2| 335|Caenorhabditis elegans Serpentine
receptor, class h protein7 protein.
Length = 335
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = -2
Query: 199 KLINVIKALYYGSSCRVLHRGKLTDNIVVTAGVKQGCLLSPLL 71
K IN +K + + +HR L ++V++A + GC+L+PLL
Sbjct: 221 KCINSVKT-QLSAKTKQMHRNFLV-SLVISAAIHGGCILTPLL 261
>AC006673-5|AAF39919.2| 335|Caenorhabditis elegans Serpentine
receptor, class h protein8 protein.
Length = 335
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -2
Query: 211 GVPDKLINVIKALYYGSSCRVLHRGKLTDNIVVTAGVKQGCLLSPLL-FIMVLDDVMRRV 35
G+ K IN ++ + + +HR L ++++ A + GC+L PLL F+ + V+
Sbjct: 217 GITIKCINSVRTRL-SAKTKQMHRNFLI-SLLIAAAIHGGCILIPLLGFLWAISFVVSLS 274
Query: 34 TC 29
C
Sbjct: 275 QC 276
>U21319-1|AAC46673.2| 258|Caenorhabditis elegans Hypothetical
protein C30G12.4 protein.
Length = 258
Score = 27.9 bits (59), Expect = 4.7
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Frame = -3
Query: 315 NVRRCSVKFSHCLSTSKR-----LLTMSVGPAFELF*RKKACPTSS 193
N RRC HC ST R LL +S+ P K ACP SS
Sbjct: 48 NCRRCLDASRHCFSTRSRTEERLLLQLSI-PFLHQISPKPACPPSS 92
>Z70309-8|CAE17922.1| 196|Caenorhabditis elegans Hypothetical
protein R102.9 protein.
Length = 196
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -2
Query: 421 GWPKWVDSELREEQAGFRPE--RSCSDQ 344
GW K++ S +RE + GF E R+C D+
Sbjct: 165 GWEKFMSSVIREMKKGFLDEARRNCHDE 192
>Z50741-1|CAA90609.1| 395|Caenorhabditis elegans Hypothetical
protein F55G7.1 protein.
Length = 395
Score = 27.5 bits (58), Expect = 6.2
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Frame = +2
Query: 32 GDSAHHIIKHHYKEQGRQQATL---LDAC-GDHDIIRKFSPVEYSTRRSIVKGFYDIYEL 199
G+ +H H + G QQ T +DA GDH ++R ++ + I +G D +E+
Sbjct: 133 GEHSHTFFPHAHHNIGNQQGTQTRSVDASVGDHSVVR-YNMETQTEWEDIKQGATDNHEI 191
Query: 200 VGHAFFLQNSSNAGPTDIVKSLFE 271
+ + ++ S PT L E
Sbjct: 192 LHNT--IKQSDTKAPTTTPNLLSE 213
>Z70684-11|CAA94604.1| 1141|Caenorhabditis elegans Hypothetical
protein F28D1.10 protein.
Length = 1141
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 342 IWSEHERSGLNPACSSLSSLSTHFGHPHQ 428
+WSEH R+ L+ LS + H+ P +
Sbjct: 808 VWSEHLRTMLSSGQEQLSFMPDHYSDPQE 836
>Z70682-10|CAA94588.1| 1141|Caenorhabditis elegans Hypothetical
protein F28D1.10 protein.
Length = 1141
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 342 IWSEHERSGLNPACSSLSSLSTHFGHPHQ 428
+WSEH R+ L+ LS + H+ P +
Sbjct: 808 VWSEHLRTMLSSGQEQLSFMPDHYSDPQE 836
>AL132846-4|CAB60347.1| 328|Caenorhabditis elegans Hypothetical
protein Y43D4A.6 protein.
Length = 328
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/78 (20%), Positives = 38/78 (48%)
Frame = -2
Query: 340 NLLRMILEQCQEMQCEVFTLFIDFEKAFDNVSWSSI*TVLKKKGVPDKLINVIKALYYGS 161
N+++M C +F F+ F+ + + + V + KG +L++ +K ++
Sbjct: 65 NIVKMYGMSMDTEFCYLFQEFVTGGDLFEKIDFENGMPVNQVKGYLKQLMSGLKYIH--- 121
Query: 160 SCRVLHRGKLTDNIVVTA 107
C ++HR DN+++ +
Sbjct: 122 GCGIVHRDIKPDNLLINS 139
>AF040643-14|AAB94956.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.1 protein.
Length = 299
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +2
Query: 35 DSAHHIIKHHYKEQGRQQATLLDACGDHDIIRKFSPVEYSTRRSIVKGFYDIYELVGHAF 214
+S H +I ++K G + + + D K++ ++YS SI +G +I ++ G+
Sbjct: 72 ESGHGVISENFKFSGSKSDAEIPSTSDRCESFKWNKLDYSKYLSI-EGHVEIIDMTGYHD 130
Query: 215 F 217
F
Sbjct: 131 F 131
>AC006816-6|ABA00154.1| 506|Caenorhabditis elegans Hypothetical
protein Y71D11A.1 protein.
Length = 506
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 192 MSLSGTPFFFKTVQMLDQLTLSKAFSKSIN 281
M+ G F F + +LD+ TL K+F SIN
Sbjct: 411 MTSFGKFFNFDSAHLLDKCTLDKSFDLSIN 440
>AB073210-1|BAB70473.1| 1141|Caenorhabditis elegans rac effector
protein.
Length = 1141
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 342 IWSEHERSGLNPACSSLSSLSTHFGHPHQ 428
+WSEH R+ L+ LS + H+ P +
Sbjct: 808 VWSEHLRTMLSSGQEQLSFMPDHYSDPQE 836
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,781,421
Number of Sequences: 27780
Number of extensions: 263069
Number of successful extensions: 742
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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