Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329B02f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0142 - 17656751-17657554 33 0.18
08_02_1329 - 26182762-26183007,26183149-26183249,26183533-261836... 32 0.32
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678... 31 0.74
10_08_0252 - 16191136-16191279,16191639-16191750,16191833-161919... 30 0.98
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912... 29 1.7
01_01_0475 + 3500385-3500880,3501078-3501154,3501851-3502019,350... 29 2.3
09_04_0706 + 19627024-19627380,19629945-19629976,19630657-196307... 29 3.0
05_03_0471 - 14455543-14455650,14455925-14456002,14456121-144562... 28 4.0
08_02_1334 - 26224546-26225337 28 5.2
03_05_1082 - 30239385-30239561,30239937-30240009,30240382-302404... 28 5.2
12_02_1012 - 25281820-25281987,25282337-25282409,25283370-252834... 27 6.9
05_06_0046 - 25157093-25157431,25157810-25157928,25158024-251581... 27 9.1
02_04_0653 - 24747959-24748276,24748847-24748959,24749815-247500... 27 9.1
>03_04_0142 - 17656751-17657554
Length = 267
Score = 32.7 bits (71), Expect = 0.18
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 417 NLPLFLECGHTVCENCI 467
N+P L CGHT+C+NCI
Sbjct: 57 NVPYVLWCGHTMCKNCI 73
>08_02_1329 -
26182762-26183007,26183149-26183249,26183533-26183602,
26183692-26183895,26186435-26186941,26188672-26188677
Length = 377
Score = 31.9 bits (69), Expect = 0.32
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 405 ISKINLPLFLECGHTVCENCIRNIVKFHEPIECRICQK 518
++K++ P CGH CE CI+ +K + +C C+K
Sbjct: 323 LNKLDKPSTTNCGHIFCEKCIQAWLKAQK--KCPTCRK 358
>03_02_0994 -
13067254-13067379,13067483-13067521,13067824-13067893,
13068025-13068116,13068237-13068319,13068590-13068633,
13068682-13068800,13068883-13068915,13069152-13069239,
13069364-13069413
Length = 247
Score = 30.7 bits (66), Expect = 0.74
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +3
Query: 351 KKCCPNCSQPYQFQILSTISKINLPLFLECGHTVCENCIRNIVKFHEPIECRIC 512
K CP C + Y F L S L CGHT+ C ++K H+ C IC
Sbjct: 131 KNNCPICYE-YLFDSLRETS------VLRCGHTMHLQCFHEMLK-HDKFSCPIC 176
>10_08_0252 -
16191136-16191279,16191639-16191750,16191833-16191924,
16192564-16192641,16192764-16192796,16193712-16193771,
16193912-16193999,16194155-16194180
Length = 210
Score = 30.3 bits (65), Expect = 0.98
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 432 LECGHTVCENCIRNIVKFHEPIECRICQK 518
L CGHT+ C+ N+++ H C +C +
Sbjct: 107 LHCGHTIHLECL-NVMRAHHHFACPVCSR 134
>12_02_0648 +
21490202-21490296,21490547-21490634,21491216-21491260,
21491355-21491387,21491480-21491557,21491647-21491690,
21491765-21491805,21492102-21492184,21492261-21492352,
21492468-21492537,21492838-21492876,21493670-21493687,
21494586-21494713,21495235-21495358,21495585-21495716,
21496092-21496223,21496582-21496665
Length = 441
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 432 LECGHTVCENCIRNIVKFHEPIECRICQK 518
L+CGHT+ C +V+ H C IC K
Sbjct: 181 LDCGHTMHMECFSEMVE-HNKYTCPICSK 208
>01_01_0475 +
3500385-3500880,3501078-3501154,3501851-3502019,
3502385-3502473,3502601-3502765,3502841-3502918,
3503087-3503190,3503317-3503422
Length = 427
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +3
Query: 411 KINLPLFLECGHTVCENCIRNIVKFHEPIECRICQ 515
K++ P+ L C H CE+C+ F C +C+
Sbjct: 372 KMHTPILLRCKHIFCEDCVSE--WFERERTCPLCR 404
>09_04_0706 +
19627024-19627380,19629945-19629976,19630657-19630751,
19632116-19632281,19632881-19632938,19633014-19633061,
19633274-19633464,19633580-19633702,19635174-19635289,
19635841-19635924,19636009-19636259,19636438-19636647
Length = 576
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 423 PLFLECGHTVCENCIRNIVKFHEPIECRIC 512
P L CGH C C+ ++ E +EC+ C
Sbjct: 416 PSVLNCGHVYCMPCLTSV--GGEELECQFC 443
>05_03_0471 -
14455543-14455650,14455925-14456002,14456121-14456285,
14457151-14457261,14457863-14458024,14458462-14458538,
14459526-14460177
Length = 450
Score = 28.3 bits (60), Expect = 4.0
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +3
Query: 411 KINLPLFLECGHTVCENCI 467
K+++P+ L C H CE+C+
Sbjct: 429 KMHVPVLLRCKHIFCEDCV 447
>08_02_1334 - 26224546-26225337
Length = 263
Score = 27.9 bits (59), Expect = 5.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 429 FLECGHTVCENCIRNIV 479
F+ CGHT C C R ++
Sbjct: 227 FIPCGHTFCRTCARELL 243
>03_05_1082 -
30239385-30239561,30239937-30240009,30240382-30240432,
30240521-30240978,30241099-30241435,30241836-30241935,
30243880-30244003
Length = 439
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 435 ECGHTVCENCIRNIVKFHEPIECRIC 512
EC HT C+ CI + E C +C
Sbjct: 37 ECLHTFCKECIMEKIDDEEVDHCPVC 62
>12_02_1012 -
25281820-25281987,25282337-25282409,25283370-25283420,
25283523-25283932,25284083-25284413,25285340-25285439,
25287091-25287370
Length = 470
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 435 ECGHTVCENCIRNIVKFHEPIECRICQ 515
EC HT C CI + E C +C+
Sbjct: 89 ECLHTFCRKCIYKKINDEELEHCPVCK 115
>05_06_0046 -
25157093-25157431,25157810-25157928,25158024-25158189,
25158289-25158415,25158490-25158590,25158719-25158905,
25159000-25159100,25159220-25160194,25160325-25160423,
25160500-25160972,25161307-25161420,25161830-25161900,
25162015-25162086,25162334-25162377
Length = 995
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/41 (21%), Positives = 21/41 (51%)
Frame = +3
Query: 393 ILSTISKINLPLFLECGHTVCENCIRNIVKFHEPIECRICQ 515
+L ++S ++ + + C H C +C+ +K C +C+
Sbjct: 18 VLGSLSLLSSAVSISCNHVFCNDCLTESMK--STSSCPVCK 56
>02_04_0653 -
24747959-24748276,24748847-24748959,24749815-24750015,
24750097-24750267,24750354-24750425,24751515-24751543,
24752161-24752303
Length = 348
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +3
Query: 423 PLFLECGHTVCENCIRNIVKFHEPIECRIC 512
P L CGH C +C+ ++ ++C++C
Sbjct: 131 PAVLNCGHVYCMSCLSSL--DDGALKCQVC 158
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,848,193
Number of Sequences: 37544
Number of extensions: 233147
Number of successful extensions: 495
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -