Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329A12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    26   3.9  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    26   3.9  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    25   6.8  

>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 124 PPRSAAASSRCRWTCRADAS 65
           PP+SA+ASS   W C A  S
Sbjct: 186 PPKSASASSVIVWVCGAKKS 205


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 438 PNPVPEPSLVPHNQY 482
           PNPV +PSLVP   Y
Sbjct: 251 PNPVMQPSLVPQMPY 265


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 506 SDHITLQRILIMWYKRGFRNG 444
           ++H+ L R L  W   G RNG
Sbjct: 35  AEHVPLNRYLTQWNNSGRRNG 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,339,685
Number of Sequences: 5004
Number of extensions: 17762
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)