Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329A10f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U20555-1|AAC46918.1|  839|Caenorhabditis elegans zinc finger pro...    30   0.87 
L23645-6|AAO91714.1|  635|Caenorhabditis elegans Zinc finger pro...    30   0.87 
L23645-4|AAK26137.1|  867|Caenorhabditis elegans Zinc finger pro...    30   0.87 
U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glut...    30   1.2  
AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type ion...    30   1.2  
Z46787-11|CAA86750.1|  610|Caenorhabditis elegans Hypothetical p...    29   1.5  
Z69662-6|CAA93501.1|  283|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AF067944-5|AAC17673.1|  335|Caenorhabditis elegans Seven tm rece...    28   4.7  
AL032657-17|CAL44979.1|   49|Caenorhabditis elegans Hypothetical...    27   6.2  
Z82075-1|CAB04930.1|  320|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U20555-1|AAC46918.1|  839|Caenorhabditis elegans zinc finger
           protein protein.
          Length = 839

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +2

Query: 374 PFGTVPAAAEIQAGGCSKSPANSPLRRHFSEPPRGGARYPIRPIVSRIT 520
           P  T   A        S +P NS ++ H + P   GA     PI++ +T
Sbjct: 738 PLSTAATALTTTTAASSGAPVNSNIQNHRATPSTAGAPMAATPIMTAVT 786


>L23645-6|AAO91714.1|  635|Caenorhabditis elegans Zinc finger
           protein protein 1,isoform c protein.
          Length = 635

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +2

Query: 374 PFGTVPAAAEIQAGGCSKSPANSPLRRHFSEPPRGGARYPIRPIVSRIT 520
           P  T   A        S +P NS ++ H + P   GA     PI++ +T
Sbjct: 506 PLSTAATALTTTTAASSGAPVNSNIQNHRATPSTAGAPMAATPIMTAVT 554


>L23645-4|AAK26137.1|  867|Caenorhabditis elegans Zinc finger
           protein protein 1,isoform a protein.
          Length = 867

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +2

Query: 374 PFGTVPAAAEIQAGGCSKSPANSPLRRHFSEPPRGGARYPIRPIVSRIT 520
           P  T   A        S +P NS ++ H + P   GA     PI++ +T
Sbjct: 738 PLSTAATALTTTTAASSGAPVNSNIQNHRATPSTAGAPMAATPIMTAVT 786


>U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class
           glutamate receptor protein1 protein.
          Length = 1025

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 376 VWNCTRCS*DPGRRM**EPCELTTSASLFGASSRG-GPVPNSPYS 507
           +W+ TR   +  R      CEL T  SLFG S+ G G   NSP++
Sbjct: 751 IWDSTRLEFEAARH-----CELRTRGSLFGRSAYGIGLQKNSPWT 790


>AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type
           ionotropic glutamatereceptor NMR-1 protein.
          Length = 1025

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 376 VWNCTRCS*DPGRRM**EPCELTTSASLFGASSRG-GPVPNSPYS 507
           +W+ TR   +  R      CEL T  SLFG S+ G G   NSP++
Sbjct: 751 IWDSTRLEFEAARH-----CELRTRGSLFGRSAYGIGLQKNSPWT 790


>Z46787-11|CAA86750.1|  610|Caenorhabditis elegans Hypothetical
           protein C16C10.12 protein.
          Length = 610

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/57 (22%), Positives = 24/57 (42%)
 Frame = -3

Query: 519 VIRLTIGRIGYRAPPRGGSEK*RRSGEFAGLLLHPPAWISAAAGTVPNGERRQEHGV 349
           +I L++G+  +   P    +     G     L +PP WI +    +PN E +    +
Sbjct: 247 IIFLSMGKTAFMGTPHESVKFFADCGHPIPKLFNPPEWIQSKLSVIPNNETKSRETI 303


>Z69662-6|CAA93501.1|  283|Caenorhabditis elegans Hypothetical
           protein F56D5.10 protein.
          Length = 283

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
 Frame = +3

Query: 105 IRAYPRSHLILYKIIQPFSMKHQSVVFKFQTISLGVR-FEI*MIDSFSLIELDVSSRRLV 281
           I  Y   + ILY  ++ +    +++ F+ QTIS  +R   I  ++ F    L  S+R++V
Sbjct: 199 IGVYLSVYEILYLHMRLYPQHFENLPFELQTISYDLRLLAISSLNFFVYFVLTKSTRKIV 258

Query: 282 LR-YCCV-HIHRSAVF 323
           L+ +  V H+H S  F
Sbjct: 259 LKSFGSVNHLHLSQSF 274


>AF067944-5|AAC17673.1|  335|Caenorhabditis elegans Seven tm
           receptor protein 67 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
 Frame = +3

Query: 135 LYKIIQPFSMKHQSVVFKFQTISLGVRFEI*MI-----DSFSLIELDVSSRRLVLRYCCV 299
           L  I++PF+  +   +  F    L +  +I  I       F LI +   S + V RY CV
Sbjct: 57  LEMIMKPFTHNYNGALLSFNLCELNIPLKIRQIFILIWSQFYLIVISFISVQFVYRYLCV 116

Query: 300 HIHRSAVFVLVLKT 341
              +   +   LKT
Sbjct: 117 FNEQKTKYFDGLKT 130


>AL032657-17|CAL44979.1|   49|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4d protein.
          Length = 49

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 391 GYSSKRRTTSGTWRTPPVFSTRTKTALRCMCTQQY 287
           G   K  T +   RTP   + RTK  LR +CT ++
Sbjct: 8   GSRVKTHTPTSHHRTPSPRTLRTKNVLRTICTPKF 42


>Z82075-1|CAB04930.1|  320|Caenorhabditis elegans Hypothetical
           protein W07A8.1 protein.
          Length = 320

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 105 IRAYPRSHLILYKIIQPFSMKHQSVVFKFQTISLGVR-FEI*MIDSFSLIELDVSSRRLV 281
           I AY   + ILY  I+ +     S  F+FQTI+  +R   +  ++      L  S+R +V
Sbjct: 238 IGAYLSIYEILYLQIRLYPESFNSAPFEFQTITYSLRLLAVGSLNFCVYFVLTKSTRAMV 297

Query: 282 LRY 290
           L++
Sbjct: 298 LKF 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,619,757
Number of Sequences: 27780
Number of extensions: 263032
Number of successful extensions: 749
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)