Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329A09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c...    52   4e-08
SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomy...    27   2.2  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    26   3.9  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   5.2  
SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe...    25   6.8  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    25   9.0  

>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 298

 Score = 52.4 bits (120), Expect = 4e-08
 Identities = 20/45 (44%), Positives = 32/45 (71%)
 Frame = +2

Query: 368 LKTNWFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSFG 502
           +K  WF E  +MWPG   + +VK+VL+  KSKYQ++ VF++ ++G
Sbjct: 11  IKDGWFREINNMWPGQAMTLKVKKVLYAGKSKYQDVLVFESETYG 55


>SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 431 VKEVLHTEKSKYQNIQVFDTTSFGEGSC 514
           V+E+LH    + +N  V DTT  G   C
Sbjct: 256 VREILHLPSVQMKNGSVLDTTGAGNAFC 283


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -3

Query: 519 PRQEPSPKLVVSKTWIFWYFDFSVCSTSLTSNEKVPPGHISHDS 388
           P Q    + +VSK   F  F  SV +T +  +  VP    SH S
Sbjct: 198 PNQPSQQQFLVSKNDAFTTFVHSVHNTPMQQSMYVPQQQTSHSS 241


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 518 QDKNLPQNWLYQKLGYSGI 462
           +DK LP +W+++KL   GI
Sbjct: 366 RDKGLPGSWIFRKLTPGGI 384


>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 405

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 252 IPCSKYKNSFRPSYELNITELTFHNHDIYVQRYDSI 145
           +P + Y   + P Y+LN+      NH+   Q  DSI
Sbjct: 325 LPYNDYLQYYGPDYKLNVLSNNMENHNTR-QYLDSI 359


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 234 KNSFRPSYELNITELTFHNHDIYVQRYDS 148
           + SF P YE  ITE     H+ Y+++ ++
Sbjct: 341 RKSFTPMYEDIITEQVLTAHENYIKQLEA 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,172,204
Number of Sequences: 5004
Number of extensions: 43365
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)