Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329A09f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0034 - 12663290-12663355,12663437-12663566,12663903-126639...    49   2e-06
02_02_0299 - 8726024-8726101,8726460-8726534,8726836-8726965,872...    40   0.001
06_03_0297 + 19267491-19267677,19267799-19267843,19268466-192685...    40   0.002
02_02_0206 - 7771835-7771913,7772083-7772219,7772364-7772422,777...    32   0.32 
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278...    30   1.3  
07_01_1004 + 8500584-8501881,8502194-8502402,8503024-8503266,850...    27   9.1  
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549...    27   9.1  

>07_03_0034 -
           12663290-12663355,12663437-12663566,12663903-12663990,
           12664106-12664178,12666144-12666248,12667610-12667732,
           12667821-12667897,12668877-12669006
          Length = 263

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 19/42 (45%), Positives = 29/42 (69%)
 Frame = +2

Query: 380 WFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSFGE 505
           WF+E   MWPG   S +V++VL   KS YQN+ VF ++++G+
Sbjct: 34  WFSEISPMWPGEAHSLKVEKVLFQGKSDYQNVMVFQSSTYGK 75


>02_02_0299 -
           8726024-8726101,8726460-8726534,8726836-8726965,
           8727406-8727601,8727894-8727965,8728087-8728159,
           8728240-8728344,8728502-8728624,8728730-8728806,
           8729064-8729108,8729214-8729433
          Length = 397

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 14/35 (40%), Positives = 26/35 (74%)
 Frame = +2

Query: 401 MWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSFGE 505
           MWPG   S +V+++L+  KS YQ + VF+++++G+
Sbjct: 86  MWPGEAHSLKVEKILYQGKSPYQEVLVFESSTYGK 120


>06_03_0297 +
           19267491-19267677,19267799-19267843,19268466-19268542,
           19268652-19268774,19269029-19269133,19269217-19269289,
           19269588-19269690,19269890-19270144,19270996-19271125,
           19271278-19271352,19271470-19271550
          Length = 417

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 15/34 (44%), Positives = 24/34 (70%)
 Frame = +2

Query: 401 MWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSFG 502
           MWPG   S +V+ +L+  KS YQ I VF+++++G
Sbjct: 75  MWPGEAHSLKVENILYQGKSPYQEILVFESSTYG 108


>02_02_0206 -
           7771835-7771913,7772083-7772219,7772364-7772422,
           7772535-7772610,7772717-7772873,7773241-7773329,
           7773648-7773750,7773919-7774013,7774301-7774367,
           7774894-7775066
          Length = 344

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 350 KKKMDKLKTNWFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSFGE 505
           K++  + ++ W+ E  D        + +  VLH   SKYQ I + DT  FG+
Sbjct: 31  KQQQREEESKWYEEEID--DDLKLCYALNSVLHRGASKYQEIALIDTKHFGK 80


>10_07_0176 -
           13826764-13827064,13827271-13827377,13827474-13827836,
           13827912-13828079,13828153-13828374,13828784-13829023,
           13829640-13829719,13829853-13830018,13830720-13830783,
           13830861-13830962,13831085-13831227,13831370-13831474,
           13831551-13831706,13832125-13832241,13832315-13832392,
           13832466-13832550,13833334-13833455,13833546-13833611,
           13835190-13835284,13835427-13835523,13835873-13835983,
           13836083-13836164,13836292-13836353,13836620-13836685,
           13838002-13838232
          Length = 1142

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = -1

Query: 236 IKTRFALLTNSTLLNSHFTITIYMSKDMIRYI*QTETLDNDL 111
           + T   + T  TL ++   I++Y+S +MI++I  T+ ++NDL
Sbjct: 339 VVTILTMFTLITLYSTIIPISLYVSIEMIKFIQCTQFINNDL 380


>07_01_1004 +
           8500584-8501881,8502194-8502402,8503024-8503266,
           8503381-8503697,8503891-8504250
          Length = 808

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 368 LKTNWFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQ 478
           L  NWFT S   W GG  + +   V +   +  +N+Q
Sbjct: 402 LDDNWFTGSVPQWLGGLKTLQSLTVSYNNFTGCENLQ 438


>01_06_0795 -
           32051794-32053362,32053452-32053595,32054102-32054965,
           32055335-32055892
          Length = 1044

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 494 WLYQKLGYSGILIFLCAVLL*LRMR 420
           WL+ +    GIL+ +CAV L LR+R
Sbjct: 56  WLHPRDNTRGILLAVCAVALLLRVR 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,549,337
Number of Sequences: 37544
Number of extensions: 228557
Number of successful extensions: 421
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)