Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329A07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    27   1.3  
SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.0  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    25   5.2  

>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 22/58 (37%), Positives = 30/58 (51%)
 Frame = -2

Query: 502 SAKCVPLVPIRHEVLIKQVLYSLSSNTLTY*H*LTLIDFTEMRQRQSHLQLSKRFNLN 329
           SAK V LVP+  + L  QV Y        Y   L L+D  E   R   LQL+K+++L+
Sbjct: 473 SAKKVNLVPLYIQYLSNQVQYE------AYSRFLILVD--EESARSEQLQLAKKYSLD 522


>SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 394 IDFTEMRQRQSHLQLSKRFNLNSFLLSPTAFDLQFTNQ 281
           IDF    +++ +   SKR  L+  L  PT  +++F N+
Sbjct: 67  IDFRFFSKKKKNEHFSKRRKLSKVLTPPTNDEIKFVNR 104


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 81  YISMKNIINVACILQRLSVLHCKMFDLRYYV-DVFKNT 191
           Y+  KNI  +AC++   ++  C  +    Y  D F++T
Sbjct: 155 YVIRKNIEKLACLVHNEAMRRCSSYTSAIYTWDFFQDT 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,857,508
Number of Sequences: 5004
Number of extensions: 34100
Number of successful extensions: 62
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)