Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329A07f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031633-27|CAA21029.2|  385|Caenorhabditis elegans Hypothetical...    29   1.5  
AF117337-1|AAD22029.1|  277|Caenorhabditis elegans Hus1-like pro...    28   4.7  
AF106587-2|AAC78225.1|  277|Caenorhabditis elegans Human hus1 re...    28   4.7  
AC006673-5|AAF39919.2|  335|Caenorhabditis elegans Serpentine re...    28   4.7  
AF101319-4|AAC69352.1|  463|Caenorhabditis elegans Hypothetical ...    27   6.2  

>AL031633-27|CAA21029.2|  385|Caenorhabditis elegans Hypothetical
           protein Y39A1A.17 protein.
          Length = 385

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
 Frame = +3

Query: 66  VNVHTYISMKNIIN--VAC--ILQRLSVLHCKMFDLRYYV-DVFKN 188
           V+ + Y+  +NII   + C  +L  L +L C M D  Y++ +VF+N
Sbjct: 153 VSCNRYLKKRNIIKLYIECDMVLPELQLLDCSMTDFVYFIFEVFQN 198


>AF117337-1|AAD22029.1|  277|Caenorhabditis elegans Hus1-like
           protein protein.
          Length = 277

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +2

Query: 191 IDVISKSVPKSAYKFKKKDCCVIFVKTILSLIC 289
           IDV  K +  S  K  KK CCV   K  L+ IC
Sbjct: 13  IDVFIK-ILTSVSKLSKKRCCVKIEKNALNFIC 44


>AF106587-2|AAC78225.1|  277|Caenorhabditis elegans Human hus1
           related protein 1 protein.
          Length = 277

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +2

Query: 191 IDVISKSVPKSAYKFKKKDCCVIFVKTILSLIC 289
           IDV  K +  S  K  KK CCV   K  L+ IC
Sbjct: 13  IDVFIK-ILTSVSKLSKKRCCVKIEKNALNFIC 44


>AC006673-5|AAF39919.2|  335|Caenorhabditis elegans Serpentine
           receptor, class h protein8 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 139 STERRCRMHATFIIFFIDIYVCTFT*SENANVNH 38
           S  RRC M+  ++ F   ++VC FT     ++ H
Sbjct: 127 SIARRCVMYLRYMFFICVVFVCIFTILSYPDLKH 160


>AF101319-4|AAC69352.1|  463|Caenorhabditis elegans Hypothetical
           protein K08D9.2 protein.
          Length = 463

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 207 FDITSMYF*IHRRNIVNRTFYNE-AQRDVVECMRHL 103
           +D+T +Y+   RR I N +F  + A   VV C R +
Sbjct: 116 YDVTCLYYDCKRREIANSSFPTQTAPMSVVTCPRRV 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,139,843
Number of Sequences: 27780
Number of extensions: 186390
Number of successful extensions: 315
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)