Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329A05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    27   2.2  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    26   3.0  
SPAC2F7.05c |||translation initiation factor eIF5 |Schizosacchar...    26   3.9  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   9.0  

>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -1

Query: 155 VNTHNITVRNQC--CPTHRNSCKSHTYIKTSSYGEEKINNE 39
           V+TH+  + N    CP H+ S ++ T   ++ +G EK N+E
Sbjct: 74  VDTHDHPLANPPPGCPMHKASNENSTGFFSNLFGREKQNSE 114


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 138  HCSESMLPYASQ*L*ITYLHQNFELWRGKNQQ*IKENVS 22
            +C+E +L Y S  L   YLH N +L   KN   +K+ +S
Sbjct: 1600 NCNEMLLTYLSNALDENYLHWNVKLAILKNAPHLKKIMS 1638


>SPAC2F7.05c |||translation initiation factor eIF5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 321 LHQSF*SIK*CRVFNKINDETIHHTNK*IVV 229
           L  ++  +    ++ K+ +E IHH +K IVV
Sbjct: 242 LEDNYPGVSDVEIYKKMKEENIHHKSKAIVV 272


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +1

Query: 208  CFI*NTFYYYLLICVMNCFIIYFVKYTAL 294
            C+  N    +L  C+++ FI++F+ +  L
Sbjct: 1381 CYQLNPVVNWLKRCIISIFIVFFISFVPL 1409


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,965,818
Number of Sequences: 5004
Number of extensions: 36907
Number of successful extensions: 68
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)