Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329A05f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0253 - 6319198-6319240,6319364-6319552,6319650-6319995,632...    31   0.56 
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191...    29   3.0  
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798...    28   5.2  

>09_02_0253 -
           6319198-6319240,6319364-6319552,6319650-6319995,
           6320811-6320893,6320977-6321074,6321384-6321461,
           6321891-6322000,6322083-6322180,6323199-6323296,
           6323403-6323463,6323688-6323831,6324103-6324206,
           6324634-6324787,6324860-6324879,6324967-6325029,
           6326521-6326632,6326711-6326796,6326872-6326899,
           6327242-6327293,6329034-6329250
          Length = 727

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 172 FTCSL*NNFLV*CFI*NTFYYYLLICVMNCFIIYFVKYTAL 294
           + C    + L+ CF  N F YYL++C ++   +Y  KY  L
Sbjct: 284 YLCITIYHLLIACFTVNYFIYYLILCNLD-HSVYLFKYAGL 323


>02_01_0285 -
           1913425-1914065,1914094-1914177,1914249-1915140,
           1915205-1915249,1915335-1915870,1915987-1916041
          Length = 750

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -1

Query: 167 VYYRVNTHNITVRNQCCP-THRNSCKSHTYIKTSSYGEEKINNELRKM 27
           VY ++NT  + V +  CP T +  C+ H   +       K+N  L KM
Sbjct: 523 VYAQINTQPLKVGSPVCPTTMKRICRQHGIPRWPFRKISKVNRSLDKM 570


>09_04_0087 + 14476539-14476675,14478876-14479635,14479720-14479871,
            14479958-14480024,14480632-14480831,14480915-14481068,
            14481585-14481669,14481766-14481857,14482575-14482766,
            14482867-14482992,14483072-14483125,14483494-14483550,
            14484509-14484606,14484703-14485038,14485116-14485203,
            14486891-14487016,14487082-14487138,14488054-14488133,
            14488228-14488270,14488948-14489034,14489331-14489420,
            14489996-14490054,14490141-14490231,14490330-14490495,
            14490662-14490755,14491787-14492909
          Length = 1537

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 155  VNTHNITVRNQCCPTHRNSCKSHTYIKTSSYGEEKI 48
            V+ HNI  +N C    +NSC       ++S G  K+
Sbjct: 1329 VSNHNIEEQNSCHDREQNSCHDRESRMSASIGNVKL 1364


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,075,122
Number of Sequences: 37544
Number of extensions: 184811
Number of successful extensions: 275
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)