Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329A05f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64859-10|AAC69091.2|  383|Caenorhabditis elegans Hypothetical p...    30   1.2  
AL161712-21|CAC70129.2|  729|Caenorhabditis elegans Hypothetical...    27   6.2  

>U64859-10|AAC69091.2|  383|Caenorhabditis elegans Hypothetical
           protein R09F10.1 protein.
          Length = 383

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 382 NFYVDKLINHKISNLKHLTSFTSIIL 305
           +F+V + +NHK+ NLKH   F   IL
Sbjct: 62  SFFVFQRLNHKMENLKHEQMFNDFIL 87


>AL161712-21|CAC70129.2|  729|Caenorhabditis elegans Hypothetical
           protein Y66D12A.5 protein.
          Length = 729

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 401 CMIVYVKMTVLPPTLSLNFYVN*YK 475
           C+ + V   VLPP L  ++YVN YK
Sbjct: 173 CIHLVVDRLVLPPDLIRDYYVNWYK 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,766,024
Number of Sequences: 27780
Number of extensions: 206758
Number of successful extensions: 401
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)