Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS329A04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    71   1e-13
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    29   0.56 
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    29   0.56 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   1.3  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    26   3.0  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    26   3.9  
SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i...    25   6.8  
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce...    25   9.0  

>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
            Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 70.5 bits (165), Expect = 1e-13
 Identities = 45/111 (40%), Positives = 62/111 (55%)
 Frame = -1

Query: 521  LAIRQAIEAEIHRERSRXXXXXXAVMDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRK 342
            LAI+ +IE +I RE          V+ MDE+  V ++ R H EEAMK ARRSVSD ++R+
Sbjct: 716  LAIKDSIEEDIKRENETGEAPADDVV-MDEDASVSQVQRHHVEEAMKMARRSVSDAEVRR 774

Query: 341  YEMFAQTLQQSRGFGTNFRFPTNXXXXXXXXXXXGDQPTFQEEGGDDDLYS 189
            YE +A  L  SRG  T F+F +             + P+F  +G  DDLY+
Sbjct: 775  YEAYAHQLLTSRGL-TGFQFDS--------ADSNTNGPSFGNDGA-DDLYA 815


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 422 VPEISRAHFEEAMKFARRSVSDNDIRKYE 336
           +P IS  HF+ +++  R SVS   I +YE
Sbjct: 622 IPPISLNHFKASLRTIRPSVSQEGIHRYE 650


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -1

Query: 428 DPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQ 324
           +P+  ++ A FE A K  + SVSD D +KY+  A+
Sbjct: 735 EPI-RVTNADFELAFKNIKPSVSDRDRQKYQRLAK 768


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 268  ELQGARVLQRATSPRSRRRGVTTTCTAKLCLA 173
            +L+ A  LQ+   PR+RR+G T   +AK  LA
Sbjct: 1411 KLKAAERLQKPAIPRTRRKGHTEPKSAKSLLA 1442


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 268 ELQGARVLQRATSPRSRRRGVTTTCTAKLCLARDL 164
           ELQ   V   + SPR R  GVT   TA++   R +
Sbjct: 60  ELQQKNVPPSSRSPRRRVAGVTNNVTARISSKRKI 94


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = -2

Query: 163 GASPPSR*TRTNVLSVCPACRP-TTPTWRLAPAG 65
           G +   R   TN    C  C+  TTP WR +P G
Sbjct: 619 GDANTRRANATNPTPTCTNCQTRTTPLWRRSPDG 652


>SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta
           5-->4-isomerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 340

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/47 (19%), Positives = 23/47 (48%)
 Frame = -1

Query: 503 IEAEIHRERSRXXXXXXAVMDMDEEDPVPEISRAHFEEAMKFARRSV 363
           ++A ++   +        ++++DE  P+PE+    + E+   A + V
Sbjct: 109 VDALVYTSSAGVVFNGADLINVDESQPIPEVHMDAYNESKALAEKQV 155


>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 473

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 128 VSSGLSRWWRCPEVASETQFSCTG 199
           V SG   W RC +V    Q+ CTG
Sbjct: 158 VISGHLGWVRCVDVEPGNQWFCTG 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,064,034
Number of Sequences: 5004
Number of extensions: 38756
Number of successful extensions: 107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)