Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329A01f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po... 29 0.32
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 28 0.97
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 27 1.7
SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomy... 26 3.0
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 26 3.0
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha... 25 5.2
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 25 5.2
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 25 5.2
SPCC31H12.05c |sds21||serine/threonine protein phosphatase Sds21... 25 6.8
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc... 25 9.0
>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 29.5 bits (63), Expect = 0.32
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -1
Query: 203 ARHCFGLSVHSPDIVLPI*QTEWTKSNIEL 114
A+HC L +SP +++ Q W ++N++L
Sbjct: 51 AKHCLLLYTNSPSVIIGRNQNPWVEANVKL 80
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 27.9 bits (59), Expect = 0.97
Identities = 21/47 (44%), Positives = 27/47 (57%)
Frame = -3
Query: 390 LLPERIGGPADELAKIFLAWFPCQR*HVAVVVSTNLLDTSV*CFGIS 250
+LP PAD AKIF + P R VVV+TN+ +TS+ GIS
Sbjct: 735 ILPIYSQMPADLQAKIFDSAEPGVR---KVVVATNIAETSLTVHGIS 778
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 27.1 bits (57), Expect = 1.7
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = +1
Query: 307 YMSSLTWKPREEDLGQLVCRA 369
+M ++ W+ RE ++G++VC A
Sbjct: 145 FMKTVHWRSREMNVGEIVCNA 165
>SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 26.2 bits (55), Expect = 3.0
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 280 KKVSGHNHRYMSSLTWKPREEDLGQLVCRATNSFGEQKRPCTYTITPGG 426
K V GH + S+ R+ + V + +S + C+Y ITPGG
Sbjct: 279 KPVGGHVMAHASATRLLLRKGRGEERVAKLNDSPDMPEAECSYVITPGG 327
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 26.2 bits (55), Expect = 3.0
Identities = 32/103 (31%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Frame = -3
Query: 417 CNGVRAGSLLLPE--RIGGPADELAKIFLAWFPCQR*HVAVV--VSTNLLDTSV*CFGIS 250
C + GS L + RI A L KI H +V V TN+L+ C +
Sbjct: 407 CRRLTRGSASLEDVVRIYQMAKALPKIVTVLDSLTSEHKDLVDKVYTNVLNNH--CKNLE 464
Query: 249 KGPTELPSVRVMLPPRTSLFRPLRAQPRHRLADLTNRMDEIQH 121
K EL + L S +RA+ L DL R+DE+QH
Sbjct: 465 K-LIELVETTIDLEALDSHQYIIRAEFDEELLDLRQRLDELQH 506
>SPCC1020.08 |||wybutosine biosynthesis protein
Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 688
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 205 SHVTVSASPCTAPTSSCRFDKQNGRNP 125
SH+ + A+P A + C F ++G NP
Sbjct: 345 SHLCMEATPSLACANKCTFCWRHGTNP 371
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 309 VAVVVSTNLLDT-SV*CFGISKGPTELPSVRVMLPPRTSLFRPLR 178
++ + TNL+ S + KGPT L ++ ++PP +PLR
Sbjct: 362 ISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVPPEKPYRKPLR 406
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -3
Query: 366 PADELAKIFLAWFPCQR*HVAVVVSTNLLDTSV*CFGI 253
P ++ ++FL P H VV+STN+ +TSV GI
Sbjct: 348 PQEQQLQVFL---PALANHRKVVLSTNIAETSVTISGI 382
>SPCC31H12.05c |sds21||serine/threonine protein phosphatase
Sds21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 25.0 bits (52), Expect = 6.8
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = +3
Query: 3 YTVSSLTLAPSLRDNKHDLTCRAHNSHLPNDLFENKVKLNVGFRPFCLSNRQDDVGAVHG 182
YT + ++ L+ + DL CRAH F K +L F D+VGA+
Sbjct: 221 YTFGADVVSRFLQKHDLDLICRAHQVVEDGYEFFGKRQLVTIFSAPNYCGEFDNVGAMMS 280
Query: 183 EAETVTCEVE 212
E + C +
Sbjct: 281 VNEDLLCSFQ 290
>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 102 ENKVKLNVG-FRPFCLSNRQDDVGAVHGEAETVTCEVEASPE 224
+ +VK +V FR CL N DD+G + ET+ EA+ E
Sbjct: 688 DKQVKFDVEPFRKHCLVNGLDDIGLTL-QKETMIDAFEAARE 728
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,299,464
Number of Sequences: 5004
Number of extensions: 48933
Number of successful extensions: 137
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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