Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS329A01f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0052 - 40767252-40767347,40767455-40767562,40767689-407678... 30 0.98
01_07_0051 - 40759529-40759624,40759728-40759835,40759972-407601... 30 1.3
01_07_0299 + 42594363-42594424,42594516-42594798,42595185-425954... 29 2.3
09_01_0117 + 1808669-1809181,1810038-1810059,1810170-1810223,181... 29 3.0
06_03_0654 + 23173253-23173812,23174365-23175262 29 3.0
02_04_0636 - 24648288-24648740,24648902-24649049,24650165-24650703 29 3.0
01_07_0050 - 40751994-40752086,40752193-40752300,40752501-407526... 29 3.0
01_06_1596 - 38514278-38514346,38514547-38514705,38514776-385148... 29 3.0
06_03_1451 + 30252366-30252373,30252621-30252867,30253441-302538... 28 5.2
06_01_1176 + 10112257-10113126 27 6.9
03_06_0643 + 35248597-35250585,35250663-35250773,35250867-352509... 27 6.9
02_05_1068 + 33862378-33863640 27 6.9
11_04_0455 + 17903921-17904046,17904149-17904214,17905028-179051... 27 9.1
03_05_0907 + 28678909-28679253 27 9.1
>01_07_0052 -
40767252-40767347,40767455-40767562,40767689-40767855,
40767930-40768056,40768138-40768299,40768467-40768630,
40768722-40768815,40768892-40769016,40769110-40769255,
40769361-40769449,40769564-40769608,40770165-40770230,
40770332-40770457
Length = 504
Score = 30.3 bits (65), Expect = 0.98
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 88 LTICLRTKSSSMLDFVHSVCQIGKTMSGLC 177
+ +C + K+ + LD HS+ +GKT G+C
Sbjct: 278 IAVCKKYKAYTYLDEAHSIGAVGKTGRGVC 307
>01_07_0051 -
40759529-40759624,40759728-40759835,40759972-40760138,
40760670-40760796,40760885-40761046,40761235-40761398,
40761561-40761654,40761736-40761860,40762304-40762449,
40762796-40762884,40763453-40763518,40763824-40763973
Length = 497
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 88 LTICLRTKSSSMLDFVHSVCQIGKTMSGLC 177
+ +C + K+ + LD HS+ +GKT G+C
Sbjct: 271 VAVCKKYKAYTYLDEAHSIGAVGKTGRGVC 300
>01_07_0299 +
42594363-42594424,42594516-42594798,42595185-42595409,
42596395-42596592,42596871-42597325,42597824-42597962,
42598035-42598113,42598686-42598924,42599058-42599362,
42599449-42599560,42599640-42599804,42599933-42600071,
42600111-42600219,42600733-42600823,42600940-42601064,
42601148-42601297,42601383-42601455,42601630-42601810,
42601888-42602046,42602939-42603085,42603176-42603220,
42603305-42603382,42603565-42603719,42603875-42603927,
42604012-42604090,42604271-42604357
Length = 1310
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -2
Query: 151 FDKQNGRNPTLSLTLFSNKSLGR--CELCALQVKSCLLSRSDGASVK 17
FDKQ G+ ++L +FS + L + SC RSDG SVK
Sbjct: 759 FDKQGGQLLAVALLVFSRTWISDRIASLNGWLLSSCTGDRSDGTSVK 805
>09_01_0117 +
1808669-1809181,1810038-1810059,1810170-1810223,
1810684-1810892
Length = 265
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = -3
Query: 252 SKGPTELPSVRVMLPPRTSLFRPLRAQPRHRLADLTNRMDEIQH 121
S P PS+ V P SL R LR P HR L+NR H
Sbjct: 63 SASPLLNPSIHVAAAP--SLGRSLRFPPPHRSRSLSNRRRHSSH 104
>06_03_0654 + 23173253-23173812,23174365-23175262
Length = 485
Score = 28.7 bits (61), Expect = 3.0
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -1
Query: 293 PLTFLTLVYNVLESAKVQLNCXRFG*CFHLARHCFGLSVHSPDIVLP--I*QTEWTK 129
P T T+ YNV E K +C R+ L RH G+ + + +VLP WTK
Sbjct: 350 PPTRHTVFYNVAEK-KAWCDCCRYAFSAILCRHVLGVFILAGIMVLPETCIAKRWTK 405
>02_04_0636 - 24648288-24648740,24648902-24649049,24650165-24650703
Length = 379
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 15 SLTLAPSLRDNKHDLTCRA 71
+LT+ P RDN+H L CRA
Sbjct: 342 ALTMPPKGRDNRHQLWCRA 360
>01_07_0050 -
40751994-40752086,40752193-40752300,40752501-40752667,
40752756-40752882,40752984-40753145,40753674-40753837,
40753931-40754024,40754160-40754284,40754387-40754532,
40754676-40754764,40755524-40755589,40755990-40756148
Length = 499
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 88 LTICLRTKSSSMLDFVHSVCQIGKTMSGLC 177
+++C + K + +D HS+ +GKT G+C
Sbjct: 274 ISVCKKYKVYTYMDEAHSIGAVGKTGRGVC 303
>01_06_1596 -
38514278-38514346,38514547-38514705,38514776-38514898,
38514985-38515047,38515248-38515352,38515487-38515586,
38515716-38515786,38516329-38516385,38516830-38516907,
38516975-38517049,38517180-38517230,38517453-38517466,
38517516-38517616,38517703-38517764,38518346-38518372,
38518901-38519581
Length = 611
Score = 28.7 bits (61), Expect = 3.0
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -2
Query: 394 ASAPRKNWWPGRRAGQDLP 338
++AP++ WW G G++LP
Sbjct: 188 SAAPKREWWGGATLGEELP 206
>06_03_1451 +
30252366-30252373,30252621-30252867,30253441-30253893,
30253971-30254555
Length = 430
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 455 MTTHSGEIGAPPGVMVYVQGRFCSPKELVARQTSW 351
+ H G+ PG+M + GR C+P + Q+SW
Sbjct: 396 LNVHLGKATLQPGLMFNIDGRRCAP--ALVFQSSW 428
>06_01_1176 + 10112257-10113126
Length = 289
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 232 AXGSGDASTSHVTVSASPCTAPTSS 158
A G GD S S + +A+P AP SS
Sbjct: 114 AGGGGDGSGSTASATATPAAAPASS 138
>03_06_0643 +
35248597-35250585,35250663-35250773,35250867-35250971,
35252215-35252304
Length = 764
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = -3
Query: 153 DLTNRMDEIQH*A*LCSQTNR*VDANCVLYKLSRVCCRAAMELV 22
++ N+ E+ H C +T+R ++ NC L++ S + CR + ++
Sbjct: 485 EMVNKKYEVVH----CMETDR-MECNCGLFQFSGIVCRHTLSVL 523
>02_05_1068 + 33862378-33863640
Length = 420
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +3
Query: 369 HQFFRGAEATLHVHHYT-GGRTYLTRV 446
H+F R A A +H YT G R Y T V
Sbjct: 164 HEFLREASAMFEMHVYTLGNRNYATAV 190
>11_04_0455 +
17903921-17904046,17904149-17904214,17905028-17905116,
17905513-17905658,17905743-17905867,17905964-17906057,
17906144-17906307,17906449-17906610,17906683-17906809,
17906854-17906862,17906912-17907078,17907113-17907307,
17907398-17907490
Length = 520
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +1
Query: 88 LTICLRTKSSSMLDFVHSVCQIGKTMSGLC 177
+ +C + K+ + LD HS+ +G++ G+C
Sbjct: 263 IAVCKKYKAYTYLDEAHSIGAVGQSGRGVC 292
>03_05_0907 + 28678909-28679253
Length = 114
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +2
Query: 326 GNHARKILASSSAGPPILSGS--RSDPARTPLHRGA 427
G+HAR+++ +A P+L GS ++ A P + GA
Sbjct: 39 GDHARRLIGDGAAARPLLHGSAAAANGASAPGNAGA 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,449,888
Number of Sequences: 37544
Number of extensions: 386958
Number of successful extensions: 1098
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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